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AT2G25930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : hydroxyproline-rich glycoprotein family protein
Curator
Summary (TAIR10)
Encodes a novel nuclear protein that is expressed rhythmically and interacts with phytochrome B to control plant development and flowering through a signal transduction pathway. Required component of the core circadian clock regardless of light conditions.
Computational
Description (TAIR10)
EARLY FLOWERING 3 (ELF3); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G21320.1); Has 3878 Blast hits to 3344 proteins in 292 species: Archae - 0; Bacteria - 125; Metazoa - 1474; Fungi - 865; Plants - 343; Viruses - 16; Other Eukaryotes - 1055 (source: NCBI BLink).
Protein Annotations
BioGrid:2486eggNOG:ENOG410IJW3eggNOG:ENOG4111XSPEMBL:AC004747
EMBL:AC005395EMBL:AY136385EMBL:BT000185EMBL:CP002685
EMBL:Y11994EnsemblPlants:AT2G25930EnsemblPlants:AT2G25930.1entrez:817134
GeneID:817134Genevisible:O82804GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0007623GO:GO:0009409GO:GO:0009585
GO:GO:0009733GO:GO:0009737GO:GO:0009826GO:GO:0009909
GO:GO:0010031GO:GO:0010119GO:GO:0048573hmmpanther:PTHR34281
hmmpanther:PTHR34281:SF2HOGENOM:HOG000241683InParanoid:O82804KEGG:ath:AT2G25930
KO:K12125OMA:ECSAENTPaxDb:O82804Pfam:O82804
PhylomeDB:O82804PIR:T02630PIR:T52634PRIDE:O82804
PRO:PR:O82804ProteinModelPortal:O82804Proteomes:UP000006548RefSeq:NP_180164.1
STRING:3702.AT2G25930.1TAIR:AT2G25930tair10-symbols:ELF3tair10-symbols:PYK20
UniGene:At.44999UniGene:At.48519UniProt:O82804
Coordinates (TAIR10) chr2:+:11059459..11063178
Molecular Weight (calculated) 77210.10 Da
IEP (calculated) 8.69
GRAVY (calculated) -0.92
Length 695 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRGKDEEKI LEPMFPRLHV NDADKGGPRA PPRNKMALYE QLSIPSQRFG DHGTMNSRSN NTSTLVHPGP SSQPCGVERN LSVQHLDSSA ANQATEKFVS
101: QMSFMENVRS SAQHDQRKMV REEEDFAVPV YINSRRSQSH GRTKSGIEKE KHTPMVAPSS HHSIRFQEVN QTGSKQNVCL ATCSKPEVRD QVKANARSGG
201: FVISLDVSVT EEIDLEKSAS SHDRVNDYNA SLRQESRNRL YRDGGKTRLK DTDNGAESHL ATENHSQEGH GSPEDIDNDR EYSKSRACAS LQQINEEASD
301: DVSDDSMVDS ISSIDVSPDD VVGILGQKRF WRARKAIANQ QRVFAVQLFE LHRLIKVQKL IAASPDLLLD EISFLGKVSA KSYPVKKLLP SEFLVKPPLP
401: HVVVKQRGDS EKTDQHKMES SAENVVGRLS NQGHHQQSNY MPFANNPPAS PAPNGYCFPP QPPPSGNHQQ WLIPVMSPSE GLIYKPHPGM AHTGHYGGYY
501: GHYMPTPMVM PQYHPGMGFP PPGNGYFPPY GMMPTIMNPY CSSQQQQQQQ PNEQMNQFGH PGNLQNTQQQ QQRSDNEPAP QQQQQPTKSY PRARKSRQGS
601: TGSSPSGPQG ISGSKSFRPF AAVDEDSNIN NAPEQTMTTT TTTTRTTVTQ TTRDGGGVTR VIKVVPHNAK LASENAARIF QSIQEERKRY DSSKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)