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AT3G23240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ethylene response factor 1
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ERF1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. EREBP like protein that binds GCC box of ethylene regulated promoters such as basic chitinases. Constitutive expression of ERF1 phenocopies ethylene over production. Involved in ethylene signaling cascade,downstream of EIN2 and EIN3.
Computational
Description (TAIR10)
ethylene response factor 1 (ERF1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene-responsive element binding factor 15 (TAIR:AT2G31230.1); Has 5944 Blast hits to 5682 proteins in 249 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5925; Viruses - 2; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
BioGrid:7234eggNOG:ENOG410IX3GeggNOG:ENOG410YJNREMBL:AB025608
EMBL:AF076277EMBL:AF076278EMBL:AF428390EMBL:AY086078
EMBL:AY133629EMBL:CP002686EnsemblPlants:AT3G23240EnsemblPlants:AT3G23240.1
entrez:821902Gene3D:3.30.730.10GeneID:821902Genevisible:Q8LDC8
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006952GO:GO:0009867GO:GO:0009873Gramene:AT3G23240.1
hmmpanther:PTHR31190hmmpanther:PTHR31190:SF15HOGENOM:HOG000237624InParanoid:Q8LDC8
InterPro:IPR001471InterPro:IPR016177KEGG:ath:AT3G23240KO:K14516
OMA:NDSEEMFPaxDb:Q8LDC8Pfam:PF00847Pfam:Q8LDC8
Pfscan:PS51032PhylomeDB:Q8LDC8PRIDE:Q8LDC8PRINTS:PR00367
PRO:PR:Q8LDC8PROSITE:PS51032ProteinModelPortal:Q8LDC8Proteomes:UP000006548
RefSeq:NP_188965.1SMART:SM00380SMR:Q8LDC8STRING:3702.AT3G23240.1
SUPFAM:SSF54171TAIR:AT3G23240tair10-symbols:ATERF1tair10-symbols:ERF1
UniGene:At.6341UniGene:At.74125UniProt:Q8LDC8
Coordinates (TAIR10) chr3:+:8295705..8296361
Molecular Weight (calculated) 24696.40 Da
IEP (calculated) 4.77
GRAVY (calculated) -0.71
Length 218 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPFLIQSPF SGFSPEYSIG SSPDSFSSSS SNNYSLPFNE NDSEEMFLYG LIEQSTQQTY IDSDSQDLPI KSVSSRKSEK SYRGVRRRPW GKFAAEIRDS
101: TRNGIRVWLG TFESAEEAAL AYDQAAFSMR GSSAILNFSA ERVQESLSEI KYTYEDGCSP VVALKRKHSM RRRMTNKKTK DSDFDHRSVK LDNVVVFEDL
201: GEQYLEELLG SSENSGTW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)