AT2G20815.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Family of unknown function (DUF566) | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Family of unknown function (DUF566) ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF566 (InterPro:IPR007573); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF566) (TAIR:AT2G20616.1); Has 226 Blast hits to 219 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 17; Fungi - 0; Plants - 190; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:8959988..8961917 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54300.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.79 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.64 | ||||||||||||||||||||||||||||||||||||
| Length | 482 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKSCEHELLK TRRGKSREVS SRFLSSPSAS SSPNRRNSTS NSSRDDQNNN GVKGHLGLKK HDRMSDGTRV CFGLPNQSSI EVDTKENRMP SPWINDEDNV 101: ILPGRFSVDE CALYRASSRR NSCSLLYESF NDETDSELSD VSCASSLSTN RSSWNHKPGI KVSSKYLHDL TAKPSKGNNK TKLRSQDDSQ RTNSSKGIEN 201: RLQRNNSVSR YGSSMSQWAL SPGRSLDTQA VTVPSSKLKP PRGKGVGKLI NLGFDFFRSK NKSSPFTSPL KPKTCDTESA HQLKLMNNRL LQWRFVNARA 301: CDVNKNVASQ EKNQLLCAWD TLIKLNNLVL QERIKLQKKN LEMKLNYVFL SQVKHLEAWE DMEIQHLSSL SIIRDSLHSV LSRLPLKEGA KVNLESAVSI 401: IKNAEAVTDA IISTVDDYAP TMEGIVPLAS QLAEVVVQEK LMLEKCHDLL RMISELEMQE RSLKCCFLIQ HKQTFDTNLL KH |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)