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AT4G03440.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.853
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ankyrin repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G03480.1); Has 18202 Blast hits to 9223 proteins in 460 species: Archae - 22; Bacteria - 1330; Metazoa - 10010; Fungi - 1278; Plants - 2395; Viruses - 41; Other Eukaryotes - 3126 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0666eggNOG:KOG0504EMBL:AF071527EMBL:AL161496
EMBL:CP002687EnsemblPlants:AT4G03440EnsemblPlants:AT4G03440.1entrez:827920
Gene3D:1.25.40.20GeneID:827920GO:GO:0016021GO:GO:0031347
GO:GO:0071446GO:GO:2000031Gramene:AT4G03440.1hmmpanther:PTHR24177
hmmpanther:PTHR24177:SF52InterPro:IPR002110InterPro:IPR020683InterPro:IPR026961
InterPro:IPR032846KEGG:ath:AT4G03440ncoils:CoilOMA:ACLVNAN
PANTHER:PTHR24177:SF52Pfam:PF12796Pfam:PF13962Pfscan:PS50088
Pfscan:PS50297PhylomeDB:Q9ZT72PIR:F85043PROSITE:PS50088
PROSITE:PS50297Proteomes:UP000006548RefSeq:NP_192253.1SMART:SM00248
SMR:Q9ZT72STRING:3702.AT4G03440.1SUPFAM:SSF48403TAIR:AT4G03440
TMHMM:TMhelixUniGene:At.34178UniProt:Q9ZT72
Coordinates (TAIR10) chr4:-:1524199..1527133
Molecular Weight (calculated) 83858.70 Da
IEP (calculated) 8.19
GRAVY (calculated) -0.10
Length 751 amino acids
Sequence (TAIR10)
(BLAST)
001: MARRGLRMDN SEAHLDRIEA QRSTDDQHKR RCFPVNVIKN LGTLSSRSFL RRRGDEATPP TTTIDIESVP KFLTTLRLLD LYNHPGEYVA MNSEISSAMR
101: AGNKEFLEKM ESYETPMSCF KNNKGDSILH LAAAFGHLEL VKSIVSKFPS LLLELNFKDQ LPLHVAARDG HLTVVKALVA SVTFCSDRLA EEDRERLNPY
201: ILKDKNGDTA LHSALKDLHE KTKELHEKTK DMHWLRRSKS KSLSNESTHL METAACLVNA NQDVSFLANK DEISPLYLAV EAGNVSLVNA MLNSHVNNVQ
301: DKTFNLATQL KGRKSLVHAA LKAKNTDVLD VILGKYPSLV KERDEKGRTC LSVGASVGFY QGICKLLDTS TLSIFDCDDD GSFPIHKAVE KGHENVVKEL
401: LKRFPDSVEQ LNKEGQNIFH ISAKSGKSTL FLMEHINKVD TKNHLMEEQD MDGNTPLHLA TINWRPKTVR MLTKFLSIRK KLLDKHNSVG LRPLDIAEIN
501: LQSDYVFRER MTLMVLLGVY NLRQRGISLL PTSGMTLRSR SEKLGDGEKY KDRVNILLLV AALVATMTFA AGFTMPGGFS SSAPNTGMAI LVDDRYLTTF
601: IMNDTIAMLT SVLAIVALIW AQLGDPELAH RAFHLALPAL FVALLFMCFT FFYGVLATIQ HNIVLSRIIS FVFIILFIMT GTLLTPYVIP QVYGLPIIGV
701: LTSSYLDFLL LFVNEDDDEK HYTTGSSHTC VKSGESMGSS SGVQAEKSKV L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)