AT4G03440.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.853 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Ankyrin repeat family protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G03480.1); Has 18202 Blast hits to 9223 proteins in 460 species: Archae - 22; Bacteria - 1330; Metazoa - 10010; Fungi - 1278; Plants - 2395; Viruses - 41; Other Eukaryotes - 3126 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:1524199..1527133 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 83858.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.19 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 751 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MARRGLRMDN SEAHLDRIEA QRSTDDQHKR RCFPVNVIKN LGTLSSRSFL RRRGDEATPP TTTIDIESVP KFLTTLRLLD LYNHPGEYVA MNSEISSAMR 101: AGNKEFLEKM ESYETPMSCF KNNKGDSILH LAAAFGHLEL VKSIVSKFPS LLLELNFKDQ LPLHVAARDG HLTVVKALVA SVTFCSDRLA EEDRERLNPY 201: ILKDKNGDTA LHSALKDLHE KTKELHEKTK DMHWLRRSKS KSLSNESTHL METAACLVNA NQDVSFLANK DEISPLYLAV EAGNVSLVNA MLNSHVNNVQ 301: DKTFNLATQL KGRKSLVHAA LKAKNTDVLD VILGKYPSLV KERDEKGRTC LSVGASVGFY QGICKLLDTS TLSIFDCDDD GSFPIHKAVE KGHENVVKEL 401: LKRFPDSVEQ LNKEGQNIFH ISAKSGKSTL FLMEHINKVD TKNHLMEEQD MDGNTPLHLA TINWRPKTVR MLTKFLSIRK KLLDKHNSVG LRPLDIAEIN 501: LQSDYVFRER MTLMVLLGVY NLRQRGISLL PTSGMTLRSR SEKLGDGEKY KDRVNILLLV AALVATMTFA AGFTMPGGFS SSAPNTGMAI LVDDRYLTTF 601: IMNDTIAMLT SVLAIVALIW AQLGDPELAH RAFHLALPAL FVALLFMCFT FFYGVLATIQ HNIVLSRIIS FVFIILFIMT GTLLTPYVIP QVYGLPIIGV 701: LTSSYLDFLL LFVNEDDDEK HYTTGSSHTC VKSGESMGSS SGVQAEKSKV L |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)