AT1G71340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.758 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : PLC-like phosphodiesterases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); Has 6308 Blast hits to 6301 proteins in 1557 species: Archae - 95; Bacteria - 5357; Metazoa - 60; Fungi - 20; Plants - 36; Viruses - 13; Other Eukaryotes - 727 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:26885556..26887321 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37376.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.77 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 328 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAIFEWRHRR RPFDGGGTRR RRFFSPLYSR NFKRTILFAV IFLAIFPPLY FHFKLRRIRQ IVAQKCDWLH HPPLVCAHGG DSTLAFPNTM DAYSFAIRSR 101: VDCIEVDVSR SSDGVLFALH NRDLQRIARN SSVQVGDLSM KQIKELDVSE IVKGTLGSSR IPTLEEALAL ISNSVRKVIL DAKVGPPMYE KGLAQDILSI 201: IERAQCNNCI VWAKSDTLAR DIIRRAPDTM VGYIVMVDPL TGARNSLLRM KGARVVGVYH PLIDEELVRV VRRRNKEVYA WTVDDADPMK RMLHLGVDAV 301: VTSDPSMFQG LMEDLRTECL EEGFSIRT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)