AT4G11830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : phospholipase D gamma 2 | ||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes one of three phospholipase D enzymes of the gamma class. | ||||||||||||||||||||
| Computational Description (TAIR10) |
phospholipase D gamma 2 (PLDGAMMA2); FUNCTIONS IN: phospholipase D activity; INVOLVED IN: phospholipid catabolic process; LOCATED IN: cytosolic ribosome, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase D (InterPro:IPR015679), Phospholipase D, plant (InterPro:IPR011402), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: phospholipase D gamma 3 (TAIR:AT4G11840.1); Has 2194 Blast hits to 1721 proteins in 407 species: Archae - 2; Bacteria - 532; Metazoa - 481; Fungi - 448; Plants - 557; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:7115985..7119683 | ||||||||||||||||||||
| Molecular Weight (calculated) | 92400.60 Da | ||||||||||||||||||||
| IEP (calculated) | 8.10 | ||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||
| Length | 824 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSMGGGSNHE FGQWLDQQLV PLATSSGSLM VELLHGRRIR KVDGEKSSKF TSDPYVTVSI SGAVIGRTFV ISNSENPVWM QHFDVPVAHS AAEVHFVVKD 101: NDPIGSKIIG VVGIPTKQLC SGNRIEGLFP ILNSSGKPCR KGAMLSLSIQ YTPMERMRLY QKGVGSGVEC VGVPGTYFPL RKGGRVTLYQ DAHVDDGTLP 201: SVHLDGGIQY RHGKCWEDMA DAIRRARRLI YITGWSVFHP VRLVRRNNDP TEGTLGELLK VKSQEGVRVL VLVWDDPTSM SFPGFSTKGL MNTSDEETRR 301: FFKHSSVQVL LCPRYGGKGH SFIKKSEVET IYTHHQKTMI VDAEAAQNRR KIVAFVGGLD LCNGRFDTPK HSLFGTLKTL HKDDFHNPNF VTTEDVGPRE 401: PWHDLHSKID GPAAYDVLAN FEERWMASKP RGIGKGRTSF DDSLLRINRI PDIMGLSEAS SANDNDPESW HVQVFRSIDS TSVKGFPKDP EEATGRNLLC 501: GKNILIDMSI HAAYVKAIRS AQHFIYIENQ YFLGSSFNWD SNKDLGANNL IPMEIALKIA NKIRARENFA AYIVIPMWPE GAPTSKPIQR ILYWQHKTMQ 601: MMYQTIYKAL LEVGLDGQLE PQDFLNFFCL GNREVGTREV PDGTVNVYNC PRKPPQPNAA QVQALKSRRF MIYVHSKGMV VDDEFVLIGS ANINQRSLEG 701: TRDTEIAMGG YQPHHSWAKK GSRPRGQIFG YRMSLWAEHL GFLEQEFEEP ENMECVRRVR QLSELNWGQY AAEEVTEMSG HLLKYPVQVD KTGKVSSLPG 801: CETFPDLGGK IIGSFLTLQE NLTI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)