AT2G25590.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.475 golgi 0.174 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant Tudor-like protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant Tudor-like protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: Plant Tudor-like RNA-binding protein (TAIR:AT4G32440.3); Has 129 Blast hits to 122 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:10891295..10893772 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 44215.90 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.66 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||
| Length | 381 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRFRRGSRVE VFSIKEASYG VWRSAEIISG NGHTYNVRYY SFEIANNEVV EDRVPRKIIR PCPPQVDVDR WEAGELVEVL DNNISWKTAT VLEVLSGRYY 101: VVRLLGAKAE LTVHKVYLRA RQSWQDERWV MIGKETSVAS LRVLKRPSPC DWAESAESCT RSPKKIRSLE EEGHQHRFAS SSAQKVYNDS SERRGVELYV 201: KASCNENKSG FRQMVRMVPT LVVVMLNLQK KHLDAEMKLG ENIHYQPKDN HLQSAGWISL PTIANVTSRL WNCPCLFVGG ICTVGLVIKI YRKVLNFYEI 301: KAMTFQAELP SLKKLKRLRE EEEALRIAMF LCHHYRFYIR LYSTLRKIIE LNISDSLELM LIQNFMVVTK LMNNIMICIN L |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)