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AT5G26980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : syntaxin of plants 41
Curator
Summary (TAIR10)
member of SYP4 Gene Family
Computational
Description (TAIR10)
syntaxin of plants 41 (SYP41); CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 43 (TAIR:AT3G05710.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:18031eggNOG:COG5325eggNOG:KOG0809EMBL:AF007270
EMBL:AF067789EMBL:CP002688EnsemblPlants:AT5G26980EnsemblPlants:AT5G26980.1
EnsemblPlants:AT5G26980.2entrez:832756GeneID:832756Genevisible:O65359
GO:GO:0000149GO:GO:0005802GO:GO:0006886GO:GO:0006906
GO:GO:0016021GO:GO:0031201GO:GO:0048278Gramene:AT5G26980.1
Gramene:AT5G26980.2hmmpanther:PTHR19957hmmpanther:PTHR19957:SF108HOGENOM:HOG000190358
InParanoid:O65359IntAct:O65359InterPro:IPR000727InterPro:IPR006011
InterPro:IPR006012InterPro:IPR010989KEGG:ath:AT5G26980KO:K08489
OMA:KPRYIGPPaxDb:O65359Pfam:O65359Pfam:PF05739
Pfscan:PS50192PhylomeDB:O65359PRIDE:O65359PRO:PR:O65359
PROSITE:PS00914PROSITE:PS50192ProteinModelPortal:O65359Proteomes:UP000006548
RefSeq:NP_001031950.1RefSeq:NP_198050.1scanprosite:PS00914SMART:SM00397
SMART:SM00503SMR:O65359STRING:3702.AT5G26980.1SUPFAM:SSF47661
TAIR:AT5G26980tair10-symbols:ATSYP41tair10-symbols:ATTLG2Atair10-symbols:SYP41
TMHMM:TMhelixUniGene:At.24148UniProt:O65359
Coordinates (TAIR10) chr5:-:9488724..9490604
Molecular Weight (calculated) 36136.60 Da
IEP (calculated) 9.02
GRAVY (calculated) -0.45
Length 322 amino acids
Sequence (TAIR10)
(BLAST)
001: MATRNRTLLF RKYRNSLRSV RAPLSSSSLT GTRSGGVGPV IEMASTSLLN PNRSYAPIST EDPGTSSKGA ITVGLPPAWV DVSEEISVNI QRARTKMAEL
101: GKAHAKALMP SFGDGKEDQH NIESLTQEIT FLLKKSEKQL QRLSASGPSE DSNVRKNVQR SLATDLQLLS MELRKKQSTY LKRLRQQKED GMDLEMNLSR
201: NRYRPEEDDF GDMLNEHQMS KIKKSEEVSV EREKEIQQVV ESVNDLAQIM KDLSALVIDQ GTIVDRIDYN IENVATTVED GLKQLQKAER TQRHGGMVKC
301: ASVLVILCFI MLLLLILKEI FL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)