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AT1G50970.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.540
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Membrane trafficking VPS53 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Membrane trafficking VPS53 family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Vps53-like, N-terminal (InterPro:IPR007234); BEST Arabidopsis thaliana protein match is: Membrane trafficking VPS53 family protein (TAIR:AT1G50500.1); Has 637 Blast hits to 448 proteins in 205 species: Archae - 2; Bacteria - 36; Metazoa - 221; Fungi - 169; Plants - 87; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
Protein Annotations
BioGrid:26744eggNOG:ENOG410XNMTeggNOG:KOG2180EMBL:AC079284
EMBL:AK175202EMBL:CP002684EnsemblPlants:AT1G50970EnsemblPlants:AT1G50970.1
entrez:841519GeneID:841519Genevisible:F4I7Y2GO:GO:0005794
GO:GO:0010008GO:GO:0015031hmmpanther:PTHR12820hmmpanther:PTHR12820:SF0
InParanoid:F4I7Y2InterPro:IPR007234KEGG:ath:AT1G50970ncoils:Coil
OMA:KWTIFPAPaxDb:F4I7Y2Pfam:F4I7Y2Pfam:PF04100
PIR:H96546PRIDE:F4I7Y2PRO:PR:F4I7Y2ProteinModelPortal:F4I7Y2
Proteomes:UP000006548RefSeq:NP_175510.2STRING:3702.AT1G50970.1TAIR:AT1G50970
UniGene:At.49965UniProt:F4I7Y2
Coordinates (TAIR10) chr1:+:18896323..18900268
Molecular Weight (calculated) 64128.80 Da
IEP (calculated) 6.07
GRAVY (calculated) -0.15
Length 569 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKSSGLDFI NQMFPVEASL SCVESFMQKI CDEIRRVDAT ILAVVSQQGN SGTRAKENLN DAICAAEELS HKIQEIKSKA EQTEAMVQDI CSDIKKLDFA
101: KKNITTAVTA LSRLTMLVSA VQQLQVMTSK RQYKEAATQL EAINELCNHF KAYMDLPKIM ELREKLKNIK QILKFHVFSD FSSLGTGTET EELFLLKKLS
201: DSCLVVDALE PSVREELINN FCSRELTSYE QIYVGAELKT LDEIELIYNQ LSCLIRKNQG KWTIFPASWH VPYRLCIQLS RKTRVQVESI LVNLKEKSDV
301: EKLLLELKRT LEFERELEMK FGGGGSIGDD IIGGGGNNSQ KFNFRGMISS CFEPHLTIYI EKEEMELMQL LEKVVQEETW DIEEELGCHS ENSVYLMLLD
401: AHDMKMILLK VPSLARQPEA SALLVKTATA SYVKLVNHQM KRAEAVLKVI ASPIVTVIDT YRALFPEETP MEFQRILVLK GLTKAEQQSI LDDFNNHSSR
501: ITQLSVAAKT PEAHALPLAL TNVAPAVRFK ANSEEVLTRA ASAATTSFMK LYALTGAAKD RPFRKLFNP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)