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AT3G04230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
  • PMID:15496452 (2005): nucleus
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribosomal protein S5 domain 2-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S5 domain 2-like superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S9 (InterPro:IPR000754), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 domain 2-like superfamily protein (TAIR:AT5G18380.1); Has 6825 Blast hits to 6825 proteins in 2403 species: Archae - 233; Bacteria - 4309; Metazoa - 365; Fungi - 183; Plants - 150; Viruses - 0; Other Eukaryotes - 1585 (source: NCBI BLink).
Protein Annotations
BioGrid:4913eggNOG:COG0103eggNOG:KOG1753EMBL:AC016829
EMBL:AK228186EMBL:BT004760EMBL:CP002686EnsemblPlants:AT3G04230
EnsemblPlants:AT3G04230.1entrez:819578Gene3D:3.30.230.10GeneID:819578
Genevisible:Q9M8X9GO:GO:0003735GO:GO:0005730GO:GO:0005829
GO:GO:0006412GO:GO:0009507GO:GO:0016020GO:GO:0022626
GO:GO:0022627Gramene:AT3G04230.1hmmpanther:PTHR21569hmmpanther:PTHR21569:SF6
HOGENOM:HOG000019803InParanoid:Q9M8X9IntAct:Q9M8X9InterPro:IPR000754
InterPro:IPR014721InterPro:IPR020568KEGG:ath:AT3G04230KO:K02960
OMA:SATRMESPANTHER:PTHR21569PaxDb:Q9M8X9Pfam:PF00380
Pfam:Q9M8X9PhylomeDB:Q9M8X9PRIDE:Q9M8X9PRO:PR:Q9M8X9
ProteinModelPortal:Q9M8X9Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339
Reactome:R-ATH-72689Reactome:R-ATH-72695Reactome:R-ATH-72702Reactome:R-ATH-72706
Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_187073.1SMR:Q9M8X9
STRING:3702.AT3G04230.1SUPFAM:SSF54211TAIR:AT3G04230UniGene:At.18789
UniProt:Q9M8X9
Coordinates (TAIR10) chr3:-:1113169..1113609
Molecular Weight (calculated) 16587.40 Da
IEP (calculated) 10.76
GRAVY (calculated) -0.49
Length 146 amino acids
Sequence (TAIR10)
(BLAST)
001: MATQPAKESV QCFGRKKTAT AVTYCKRGSG MIKLNGSPIE LYQPEILRFK IFEPVLLLGK HRFAGVDMRI RATGGGNTSR VYAIRQSIAK ALVAYYQKYV
101: DEQSKKEIKD ILMRYDRTLL VADPRRCESK KFGGPGARAR FQKSYR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)