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AT2G20940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1279)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1279); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1279 (InterPro:IPR009688); Has 228 Blast hits to 228 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 92; Fungi - 41; Plants - 76; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG411243XeggNOG:KOG4526EMBL:AC006234EMBL:AC006264
EMBL:AY085423EMBL:BT025706EMBL:CP002685EnsemblPlants:AT2G20940
EnsemblPlants:AT2G20940.1entrez:816628GeneID:816628GO:GO:0005739
GO:GO:0009536GO:GO:0016021Gramene:AT2G20940.1hmmpanther:PTHR21377
hmmpanther:PTHR21377:SF2HOGENOM:HOG000243282InterPro:IPR009688KEGG:ath:AT2G20940
OMA:YIAIKNNPfam:PF06916PhylomeDB:Q9SKR7PIR:B84595
Proteomes:UP000006548RefSeq:NP_565494.1STRING:3702.AT2G20940.1TAIR:AT2G20940
TMHMM:TMhelixUniGene:At.39629UniProt:Q9SKR7
Coordinates (TAIR10) chr2:-:9002264..9002653
Molecular Weight (calculated) 14143.50 Da
IEP (calculated) 10.63
GRAVY (calculated) -0.02
Length 129 amino acids
Sequence (TAIR10)
(BLAST)
001: MATRLKEIVK KYGKVALGVH FSVSGVSISG FYIAIKNNVD VESLLEKYQI PWFSSKENPN PSLDLKLEEQ GSVTSDNKTK QLAKSAGGAL ALAVLCNKAL
101: FPIRVPITMA LTPPIARFLR QRKILKTGQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)