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AT2G39390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22318864 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17934214 (2008): cytosol
  • PMID:15821981 (2005): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribosomal L29 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal L29 family protein ; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29 (InterPro:IPR001854), Ribosomal protein L29, conserved site (InterPro:IPR018254); BEST Arabidopsis thaliana protein match is: Ribosomal L29 family protein (TAIR:AT5G02610.1); Has 1205 Blast hits to 1205 proteins in 485 species: Archae - 136; Bacteria - 319; Metazoa - 302; Fungi - 146; Plants - 143; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).
Protein Annotations
BioGrid:3862eggNOG:COG0255eggNOG:KOG3436EMBL:AC004218
EMBL:AY035104EMBL:AY063036EMBL:AY084718EMBL:CP002685
EnsemblPlants:AT2G39390EnsemblPlants:AT2G39390.1entrez:818524Gene3D:1.10.287.310
GeneID:818524Genevisible:O80626GO:GO:0003735GO:GO:0006412
GO:GO:0022625GO:GO:0022626Gramene:AT2G39390.1HAMAP:MF_00374
hmmpanther:PTHR13872HOGENOM:HOG000207749InParanoid:O80626IntAct:O80626
InterPro:IPR001854InterPro:IPR018254KEGG:ath:AT2G39390KO:K02918
ncoils:CoilOMA:IAFPQRKPaxDb:O80626Pfam:O80626
Pfam:PF00831PhylomeDB:O80626PIR:T00549PRIDE:O80626
PRO:PR:O80626PROSITE:PS00579ProteinModelPortal:O80626Proteomes:UP000006548
Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72706
Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_181471.1scanprosite:PS00579
SMR:O80626STRING:3702.AT2G39390.1SUPFAM:SSF46561TAIR:AT2G39390
TIGRfam:TIGR00012TIGRFAMs:TIGR00012UniGene:At.22434UniProt:O80626
Coordinates (TAIR10) chr2:-:16450803..16451762
Molecular Weight (calculated) 14232.00 Da
IEP (calculated) 11.60
GRAVY (calculated) -0.66
Length 123 amino acids
Sequence (TAIR10)
(BLAST)
001: MARIKVHELR EKSKADLSGQ LKEFKAELAL LRVAKVTGGA PNKLSKIKVV RKSIAQVLTV ISQKQKSALR EAYKNKKLLP LDLRPKKTRA IRRRLTKHQA
101: SLKTEREKKK EMYFPIRKYA IKV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)