AT5G20450.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.839 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Dilute (InterPro:IPR002710); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT5G20490.2); Has 1723 Blast hits to 1458 proteins in 355 species: Archae - 28; Bacteria - 353; Metazoa - 453; Fungi - 121; Plants - 353; Viruses - 3; Other Eukaryotes - 412 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:6910968..6913132 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38788.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.52 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||
| Length | 341 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMEALHAMCL LAEEAKADVI REQETARKAI EEAPQVIKEN SEDTEKFNSL TSEVEALKAS LQSERQAAED LRNAFSEAEA RNSELATNLE NVTRRVDQLC 101: ESASLQSEQQ AAEDLRKALS LAEARNLELT TKLENVTRRV DQLCESESQE VLVKCISQNL GYDGGKPVAA CVIYKCLLHW RSFEVERTNI FDRIVKIIAS 201: AIEVSDSYKV SDNNEVLAYW LSNSAMLVCV LQRTFRSSTM LSSKGLMSGV LVSYLDRQSQ VVPKCPAMLF KKQLIDFLQK IYGMMRDNLK KEILPHLEYC 301: KQAPWPFSNP KERIVHWQRI VGSLRSYLNI MKANNVSLRI R |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)