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AT5G56380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.986
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:22318864 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box/RNI-like/FBD-like domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G32375.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JU5XeggNOG:ENOG411076IEMBL:AB009049EMBL:BX831314
EMBL:CP002688EnsemblPlants:AT5G56380EnsemblPlants:AT5G56380.1entrez:835739
Gene3D:3.80.10.10GeneID:835739Genevisible:Q9FM93Gramene:AT5G56380.1
hmmpanther:PTHR32212hmmpanther:PTHR32212:SF126HOGENOM:HOG000220924InParanoid:Q9FM93
InterPro:IPR001810InterPro:IPR006566InterPro:IPR013101InterPro:IPR032675
KEGG:ath:AT5G56380OMA:LIRANICPaxDb:Q9FM93Pfam:PF00646
Pfam:PF07723Pfam:PF08387Pfam:Q9FM93PhylomeDB:Q9FM93
PRIDE:Q9FM93PRO:PR:Q9FM93ProteinModelPortal:Q9FM93Proteomes:UP000006548
RefSeq:NP_200449.2SMART:SM00579SMR:Q9FM93SUPFAM:SSF52047
SUPFAM:SSF81383TAIR:AT5G56380UniGene:At.29391UniProt:Q9FM93
Coordinates (TAIR10) chr5:-:22838836..22840353
Molecular Weight (calculated) 49906.90 Da
IEP (calculated) 8.79
GRAVY (calculated) -0.09
Length 439 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRISHLADE ILSKILSFLG TKDVMQTMLL SKRFKSQWLL VPKLEFDDST HLPETWGYQE PDYGNFRRFV DRSLLSREGR VLQTLFLKLG RQCSYDDIAI
101: WVGIAVKRGL MELKLKYTDS YYPKRSSLPR SLYTCETLVV LKLKKGYLDV PDLVCLRSLK TLSLRDMNYS NASCLLRLLA SCPVLEELFI QQGYYDSCAL
201: SFKIILPCLK KLSYLPKRKK KYSGIDRSEV SGGISGLVLD APSLKYLHIV DRSGLFSVSE IININAVVKA TLEVNASRPE KLLYSLVSVE HIRLCLSATE
301: VVYPVGLGSS FHKLKRLEVC TCKSEWLDLF IHLLEDSPSL QDIKINQCHP VTNPRPQWNQ PGSVPRCLSS SLETLEWVEY GGTHEEKELS TYLFKTAVCF
401: KKASFTAKWS GGDANKKLQM LQELALSPRV SPTCELVFN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)