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AT5G57880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : multipolar spindle 1
Curator
Summary (TAIR10)
Encodes MULTIPOLAR SPINDLE 1 (MPS1), involved in meiotic spindle organization.
Computational
Description (TAIR10)
MULTIPOLAR SPINDLE 1 (MPS1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJKPeggNOG:ENOG410Z7Q5EMBL:CP002688EnsemblPlants:AT5G57880
EnsemblPlants:AT5G57880.1entrez:835898GeneID:835898GO:GO:0000212
GO:GO:0007059GO:GO:0007140GO:GO:0009553GO:GO:0009555
GO:GO:0042138GO:GO:0048236GO:GO:0051026Gramene:AT5G57880.1
hmmpanther:PTHR35768InParanoid:F4KDF5iPTMnet:F4KDF5KEGG:ath:AT5G57880
ncoils:CoilOMA:SNMFIMIPaxDb:F4KDF5PRIDE:F4KDF5
Proteomes:UP000006548RefSeq:NP_568869.1STRING:3702.AT5G57880.1TAIR:AT5G57880
tair10-symbols:ATPRD2tair10-symbols:MPS1tair10-symbols:PRD2UniGene:At.70286
UniProt:F4KDF5
Coordinates (TAIR10) chr5:+:23443977..23446439
Molecular Weight (calculated) 44462.20 Da
IEP (calculated) 5.98
GRAVY (calculated) -0.25
Length 385 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSVAEANH TEKEESLRLA IAVSLLRSKF QNHQSSSSTS RCYVSSESDA LRWKQKAKER KKEIIRLQED LKDAESSFHR DLFPANASCK CYFFDNLGVF
101: SGRRIGEASE SRFNDVLRRR FLRLACVVIL SLARRRSRRK LTRSSQRLQP SEPDYEEEAE HLRISIDFLL ELSEADSNDS NFSNWSHQAV DFIFASLKKL
201: ISMGRNLESV EESISFMITQ LITRMCTPVK GNEVKQLETS VGFYVQHLIR KLGSEPFIGQ RAIFAISQRI SILAENLLFM DPFDESFPEM DECMFILIQL
301: IEFLICDYLL PWANEAFDNV MFEEWIASVV HARKAVKALE ERNGLYLLYM DRVTGELAKR VGQITSFREV EPAILDKILA YQEIE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)