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AT1G54730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.935
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G08930.2); Has 386 Blast hits to 385 proteins in 60 species: Archae - 0; Bacteria - 8; Metazoa - 50; Fungi - 28; Plants - 299; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT1G54730EnsemblPlants:AT1G54730.1entrez:841914hmmpanther:PTHR23500
hmmpanther:PTHR23500:SF62Pfam:PF00083Pfscan:PS50850scanprosite:PS00216
TMHMM:TMhelix
Coordinates (TAIR10) chr1:+:20425399..20425801
Molecular Weight (calculated) 7301.23 Da
IEP (calculated) 9.94
GRAVY (calculated) 0.90
Length 67 amino acids
Sequence (TAIR10)
(BLAST)
1: MIGAAMSGRI ADMIGRRATM GFSEMFCILG WLAIYLSKVA IWLDVGRFLV GYGMGVFSFV VKSINSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)