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AT1G77480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28818374 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Eukaryotic aspartyl protease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT1G44130.1); Has 1752 Blast hits to 1744 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 23; Plants - 1631; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1305-MONOMEReggNOG:ENOG410XNV7eggNOG:KOG1339EMBL:AY062662
EMBL:BT001225EMBL:CP002684EnsemblPlants:AT1G77480EnsemblPlants:AT1G77480.1
entrez:844084ExpressionAtlas:Q8W4C5Gene3D:2.40.70.10GeneID:844084
GO:GO:0004190GO:GO:0016021Gramene:AT1G77480.1hmmpanther:PTHR13683
hmmpanther:PTHR13683:SF316HOGENOM:HOG000241781InterPro:IPR001461InterPro:IPR001969
InterPro:IPR021109InterPro:IPR032799InterPro:IPR032861InterPro:IPR033121
MEROPS:A01.A26OMA:LSEEAYPPANTHER:PTHR13683Pfam:PF14541
Pfam:PF14543Pfscan:PS51767PhylomeDB:Q8W4C5PRINTS:PR00792
PROSITE:PS00141PROSITE:PS51767Proteomes:UP000006548RefSeq:NP_850981.1
scanprosite:PS00141STRING:3702.AT1G77480.1SUPFAM:SSF50630TAIR:AT1G77480
TMHMM:TMhelixUniGene:At.27270UniProt:Q8W4C5
Coordinates (TAIR10) chr1:-:29114705..29117150
Molecular Weight (calculated) 51242.10 Da
IEP (calculated) 6.83
GRAVY (calculated) -0.28
Length 466 amino acids
Sequence (TAIR10)
(BLAST)
001: MMNPNKQQRR NLYFFFVFVF YVFILCARFQ TSEATKDSSA QVKLQNRRLS STVVFPVSGN VYPLGYYYVL LNIGNPPKLF DLDIDTGSDL TWVQCDAPCN
101: GCTKPRAKQY KPNHNTLPCS HILCSGLDLP QDRPCADPED QCDYEIGYSD HASSIGALVT DEVPLKLANG SIMNLRLTFG CGYDQQNPGP HPPPPTAGIL
201: GLGRGKVGLS TQLKSLGITK NVIVHCLSHT GKGFLSIGDE LVPSSGVTWT SLATNSPSKN YMAGPAELLF NDKTTGVKGI NVVFDSGSSY TYFNAEAYQA
301: ILDLIRKDLN GKPLTDTKDD KSLPVCWKGK KPLKSLDEVK KYFKTITLRF GNQKNGQLFQ VPPESYLIIT EKGRVCLGIL NGTEIGLEGY NIIGDISFQG
401: IMVIYDNEKQ RIGWISSDCD KLPNVNHDYG GDLSEEAYPI GFGLIKELFS GSDSSKNKNL VSDGEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)