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AT1G62914.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pentatricopeptide (PPR) repeat-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G63400.1).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC011000EMBL:CP002684
EnsemblPlants:AT1G62914EnsemblPlants:AT1G62914.1entrez:10723105Gene3D:1.25.40.10
GeneID:10723105Genevisible:Q9LQ15GO:GO:0005739Gramene:AT1G62914.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF884HOGENOM:HOG000015176InParanoid:Q9LQ15
InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT1G62914OMA:RMISEAW
PaxDb:Q9LQ15Pfam:PF13041Pfam:Q9LQ15Pfscan:PS51375
PIR:G96653PRO:PR:Q9LQ15PROSITE:PS51375ProteinModelPortal:Q9LQ15
Proteomes:UP000006548RefSeq:NP_001185295.1SMR:Q9LQ15STRING:3702.AT1G62914.1
SUPFAM:SSF81901TAIR:AT1G62914TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.36204UniProt:Q9LQ15
Coordinates (TAIR10) chr1:+:23301576..23303162
Molecular Weight (calculated) 59339.10 Da
IEP (calculated) 8.75
GRAVY (calculated) 0.09
Length 528 amino acids
Sequence (TAIR10)
(BLAST)
001: MLAKISSSAK RFVHRSLVVR GNAATFPLSF SFCRRRAFSG KTSYDYREVL RTGLSDIELD DAIGLFGVMA QSRPFPSIIE FSKLLSAIAK MNKFDLVISF
101: GEKMEILGIS HNLYTYNILI NCFCRCSRLS LALALLGKMM KLGYEPDIVT LNSLLNGFCH GNRISDAVAL VDQMVEMGYK PDTVTFTTLI HGLFLHNKAS
201: EAVALIDRMV QRGCQPDLVT YGAVVNGLCK RGDTDLALNL LNKMEAAKIE ANVVIYSTVI DSLCKYRHED DALNLFTEME NKGVRPNVIT YSSLISCLCN
301: YGRWSDASRL LSDMIERKIN PNLVTFSALI DAFVKKGKLV KAEKLYEEMI KRSIDPNIFT YSSLINGFCM LDRLGEAKQM LELMIRKDCL PNVVTYNTLI
401: NGFCKAKRVD KGMELFREMS QRGLVGNTVT YTTLIHGFFQ ARDCDNAQMV FKQMVSVGVH PNILTYNILL DGLCKNGKLA KAMVVFEYLQ RSTMEPDIYT
501: YNIMIEGMCK AGKWKMGGIY FVASALKE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)