AT5G49840.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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FP Images |
Arabidopsis cell culture (mitochondrial marker)
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : ATP-dependent Clp protease | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
ATP-dependent Clp protease; FUNCTIONS IN: unfolded protein binding, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein folding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), Clp protease, ATP-binding subunit ClpX (InterPro:IPR004487); BEST Arabidopsis thaliana protein match is: ATP-dependent Clp protease (TAIR:AT1G33360.1); Has 32248 Blast hits to 28333 proteins in 3078 species: Archae - 765; Bacteria - 18641; Metazoa - 1800; Fungi - 1278; Plants - 1157; Viruses - 4; Other Eukaryotes - 8603 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:20255243..20259035 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 66393.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.00 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 608 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MFCSLSISRF VSRKTITSSS LLSRSFRFLL SVDSPPHIPL LRPSSNTLIP SSSFSRRIWD SCSGGGGGGG GDDYDHIRSD VNCPRCSAQM HVIFSNRPLS 101: LTAREPGIYQ AVNFCSQCKT AFYFRPFKLS PLQGSFIELG KVKGTDDDHD DDDDDQKSFP RNWKIQGLRS DEDGEDADEE EDESNGGDKE KQSVIKLPTP 201: KEICQGLDEF VIGQEKAKKV LSVAVYNHYK RIYHASRKKG SASESYNIDM EDDNIDHVEL DKSNVLLLGP TGSGKTLLAK TLARIVNVPF AIADATSLTQ 301: ASYVGEDVES ILYKLYVEAG CNVEEAQRGI VYIDEVDKMT MKSHSSNGGR DVSGEGVQQS LLKLLEGTVV SVPIPEKGLR RDPRGDSIQM DTKDILFICG 401: GAFIDLEKTV SERQHDASIG FGASVRTNMS TSGLSSAAVT SSLLESLQSE DLVAYGLIPE FVGRLPILVS LSALNEDQLV QVLTEPKSAL GKQYKKLFRM 501: NNVQLQFTEG ATRLIARKAM SKNTGARGLR SILESILTEA MFEVPDSITE GSQSIKAVLV DEEAVGSVGS PGCGAKILKG DNVLQQFVEE AESKEKSKED 601: EAKRAQSM |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)