AT1G09710.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Homeodomain-like superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G58220.1); Has 2083 Blast hits to 515 proteins in 153 species: Archae - 0; Bacteria - 81; Metazoa - 329; Fungi - 153; Plants - 69; Viruses - 0; Other Eukaryotes - 1451 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:3141119..3144232 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64696.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.73 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||
| Length | 610 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVANNNTSSN RRKRIITEGD IATLLLRYDM ETILRMLQEI SYCSETKMDW NALVKKTTTG ITNAREYQLL WRHLSYRHPL LPVEDDALPL DDDSDMECEL 101: EASPAVSHEA SVEAIAHVKV MAASYVLSES DILDDSTVEA PLTINIPYAL PEGSQEPSES PWSSRGMNIN FPVCLQKVTS TEGMNGNGSA GISMAFRRKR 201: KRWSAEEDEE LFAAVKRCGE GNWAHIVKGD FRGERTASQL SQRWALIRKR CHTSTSVSQC GLQGTEAKLA VNHALSLALG NRPPSNKLAI GLMPTTSSCT 301: ITETEANGGS SSQGQQQSKP IVQALPRAGT SLPAAKSRVV KKTTASSTSR SDLMVTANSV AAAACMGDVL TAASGRKVEP GKTDAPRVPK TKPVKHASTV 401: CMPQPSGSLS MPKVEPGTSV AASIRSLANG KLKPVMASSS SNKPPLIAPR SEGSSMLSAS APLASLSRIV SNQRVFAGSV PATEIVTCKP DGGQKGQARG 501: NEASSSAAIQ PHQITSRNLE ISQGKQATQA QSPNLLPRKV PVVRTAVHCA TNQKLMDKPS DQTVVPIRGA GSQSKAKGEV NSKVGPVIKV SSVCGKPLEV 601: ATVAGTGQGV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)