AT2G20210.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.943 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNI-like superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNI-like superfamily protein; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, ribonuclease inhibitor subtype (InterPro:IPR003590); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:8721606..8725042 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67220.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.20 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.02 | ||||||||||||||||||||||||||||
| Length | 604 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTKAPSLAFL CIQSLKIQLL ESDNPIPDLY ELPSELLDGI VAHLPALALQ KFQTNMPFHC LDSYESGDDC CLITGRKRAR NDVLGSSWKL LFKLRWPDFV 101: DRVESPADWQ QLYWEKHLQN CVDEAAEVAL RPTFSGRICS INVSDNILRY ICHEEHIMTC QNCVCKELSF HFQTFGPYLR CLRLLNVLCV TETSELLRTS 201: KLRSLVLRWI RSEKHVEPLC KLLIQSRETL TSLELIHCKL SLSSISAICT SLHEKGIHTT GMQRFCIKTS SIEIDPLAAP SAFVSFLMSV RTLHSLHFGD 301: SNLDRYFARM VFSTLLDSSS NLSSLDLSEN NISGWLSTFS CKSVVGSLSS GKSLQSLCKL NLRGNELDRY DAENLAHALL HMPGLESLDL SGNPIEDSGI 401: RSLISYFTKN PDSRLADLNL ENCELSCCGV IEFLDTLSML EKPLKFLSVA DNALGSEVAE AVVNSFTISI ESLNIMGIGL GPLGFLALGR KLEKVSKKLL 501: SINISKNRGG LETARFLSKL IPLAPKLISI DASYNLMPPE ALLMLCDSLR TAKGDLKRLD MTGNSCISHE ADHSSLLHEF QHNGEPIFVL PSSSVSHVPY 601: DDDP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)