AT2G18850.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SET domain-containing protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SET domain-containing protein; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT3G07670.1); Has 858 Blast hits to 854 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 224; Fungi - 205; Plants - 298; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:8160788..8163479 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61726.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.69 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||
| Length | 543 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVGALNIMSE TGDLCVELPK DDPFYHHKKK FLSCKGLCVK ETLNLSGSLS QQLLNAALEK LLHFGRIVNL DKVEVYFGED ACTPAGIYSV RNEISALSWI 101: LSLIPVSCKM QTQVDTFEAL RAALKGRINE VVGAEKEKAR VVDSYRCEKE SKLVEWGQDN GVKTKLQIAQ IDGYGRGAIA SEDLKFGDVA LEIPVSSIIS 201: EEYVYNSDMY PILETFDGIT SETMLLLWTM REKHNLDSKF KPYFDSLQEN FCTGLSFGVD AIMELDGTLL LDEIMQAKEL LRERYDELIP LLSNHREVFP 301: PELYTWEHYL WACELYYSNS MQIKFPDGKL KTCLIPVAGF LNHSIYPHIV KYGKVDIETS SLKFPVSRPC NKGEQCFLSY GNYSSSHLLT FYGFLPKGDN 401: PYDVIPLDFD VIDDEDIETE FSWTTHMLRG TWLSSNHNIF HYGLPTPLLN YLRKAHGLVH HSETDLWKNL EVEIGVLENL QSTFDDMMQN LGDADSIDRE 501: NADWDVKLAM EFKERQRKIV SSILDSCSAG IKLVQESITN PPV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)