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AT4G02820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G02150.1); Has 15018 Blast hits to 7498 proteins in 232 species: Archae - 0; Bacteria - 55; Metazoa - 87; Fungi - 92; Plants - 14442; Viruses - 0; Other Eukaryotes - 342 (source: NCBI BLink).
Protein Annotations
BioGrid:13458eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC004044
EMBL:AL161495EMBL:AY062445EMBL:BT002564EMBL:CP002687
EnsemblPlants:AT4G02820EnsemblPlants:AT4G02820.1entrez:828169Gene3D:1.25.40.10
GeneID:828169Genevisible:Q9SY07GO:GO:0005739Gramene:AT4G02820.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF27HOGENOM:HOG000244098InParanoid:Q9SY07
IntAct:Q9SY07InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT4G02820
ncoils:CoilOMA:EICEWMRPaxDb:Q9SY07Pfam:PF01535
Pfam:PF13041Pfam:Q9SY07Pfscan:PS51375PhylomeDB:Q9SY07
PIR:H85035PRIDE:Q9SY07PRO:PR:Q9SY07PROSITE:PS51375
ProteinModelPortal:Q9SY07Proteomes:UP000006548RefSeq:NP_192191.1SMR:Q9SY07
STRING:3702.AT4G02820.1SUPFAM:SSF48452TAIR:AT4G02820TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.27339UniProt:Q9SY07
Coordinates (TAIR10) chr4:+:1258581..1260265
Molecular Weight (calculated) 60135.90 Da
IEP (calculated) 9.55
GRAVY (calculated) -0.35
Length 532 amino acids
Sequence (TAIR10)
(BLAST)
001: MNKNMLVRSA RPTLASIHRL FSAAAAATVD TATAPVVKPR SGGGKGGESA NKKETVVGGR DTLGGRLLSL VYTKRSAVVT IRKWKEEGHS VRKYELNRIV
101: RELRKIKRYK HALEICEWMV VQEDIKLQAG DYAVHLDLIS KIRGLNSAEK FFEDMPDQMR GHAACTSLLH SYVQNKLSDK AEALFEKMGE CGFLKSCLPY
201: NHMLSMYISR GQFEKVPVLI KELKIRTSPD IVTYNLWLTA FASGNDVEGA EKVYLKAKEE KLNPDWVTYS VLTNLYAKTD NVEKARLALK EMEKLVSKKN
301: RVAYASLISL HANLGDKDGV NLTWKKVKSS FKKMNDAEYL SMISAVVKLG EFEQAKGLYD EWESVSGTGD ARIPNLILAE YMNRDEVLLG EKFYERIVEK
401: GINPSYSTWE ILTWAYLKRK DMEKVLDCFG KAIDSVKKWT VNVRLVKGAC KELEEQGNVK GAEKLMTLLQ KAGYVNTQLY NSLLRTYAKA GEMALIVEER
501: MAKDNVELDE ETKELIRLTS QMRVTEISST IS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)