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AT1G20370.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.960
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pseudouridine synthase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase I, TruA, N-terminal (InterPro:IPR020094), Pseudouridine synthase I, TruA, alpha/beta domain (InterPro:IPR020097), Pseudouridine synthase I, TruA, C-terminal (InterPro:IPR020095), Pseudouridine synthase I, TruA (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT1G76120.1); Has 3883 Blast hits to 3550 proteins in 1359 species: Archae - 140; Bacteria - 2302; Metazoa - 346; Fungi - 312; Plants - 197; Viruses - 0; Other Eukaryotes - 586 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G20370-MONOMEReggNOG:COG0101eggNOG:KOG2553EMBL:AC026234
EMBL:AY035176EMBL:AY059123EMBL:CP002684EnsemblPlants:AT1G20370
EnsemblPlants:AT1G20370.1entrez:838625Gene3D:3.30.70.580Gene3D:3.30.70.660
GeneID:838625GO:GO:0001522GO:GO:0003723GO:GO:0005829
GO:GO:0009982Gramene:AT1G20370.1hmmpanther:PTHR11142hmmpanther:PTHR11142:SF4
HOGENOM:HOG000030790InterPro:IPR001406InterPro:IPR020094InterPro:IPR020095
InterPro:IPR020097InterPro:IPR020103KEGG:ath:AT1G20370KO:K06173
OMA:YVKCVECPANTHER:PTHR11142Pfam:PF01416PhylomeDB:Q9LN29
PIR:E86337Proteomes:UP000006548RefSeq:NP_564112.1SMR:Q9LN29
STRING:3702.AT1G20370.1SUPFAM:SSF55120TAIR:AT1G20370TIGRfam:TIGR00071
TIGRFAMs:TIGR00071UniGene:At.21336UniProt:Q9LN29
Coordinates (TAIR10) chr1:-:7051846..7053588
Molecular Weight (calculated) 61553.20 Da
IEP (calculated) 4.98
GRAVY (calculated) -0.60
Length 549 amino acids
Sequence (TAIR10)
(BLAST)
001: MENQEPDIEK LPRDDVPDRE PDHKKLKIST TGQETDSSAV TTGGSNVAER RAPKYRRRKV AIVFAFCGVG YQGMQKNPGA KTIEGELEEA LFHAGAVPDA
101: DRNKPRNYEW ARSARTDKGV SAVGQVVSGR FYVDPPGFVE RLNSKLPDQI RVFGYKRVAP SFSSKKFCDR RRYVYLIPVF ALDPCVHGEA EMVRTDLGYE
201: YVKCVECSEK GYKIPLGVMG KDTDCCDTKS LEIQSDISSS TCDAIGADVK CETLSSSVPS AENNLNSEVL DGADVSALSS KAEGMEESNT LAKVEMNNGE
301: GEDMTKSESK FCYGEKEKER FNRILSYYVG SHNFHNFTTR TKAADPAANR YILSFNANTV INLDGKDFVK CEVVGQSFML HQIRKMIGLA VAIMRNYAPE
401: SLIEASFKKD VRINVPMAPE VGLYLDECFF TSYNKRFKGS HEEVSMEEYK EVAEEFKWKY VYSHIGSAEE KDGAVAIWLH SLNQRNYPDL RSNEYQPDEV
501: IVYKKIGEAS EENIHEGNAE LFVVDKVNDE TSEGTTMEER TTLEEKATG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)