AT1G56310.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Polynucleotidyl transferase, ribonuclease H-like superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: 3'-5' exonuclease domain-containing protein (TAIR:AT5G24340.1); Has 1695 Blast hits to 1690 proteins in 549 species: Archae - 0; Bacteria - 819; Metazoa - 246; Fungi - 58; Plants - 209; Viruses - 0; Other Eukaryotes - 363 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:21082863..21085564 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67296.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.66 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||
| Length | 589 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGLDSKEADL EVIRDEKSEA NTVCLHAFSD LTYVSPVVFL YLLKECYKHG SLKATKKFQA LQYQVHRVLA NKPQPGPATF IINCLTLLPL FGVYGEGFSH 101: LVISALRRFF KTVSEPTSEE DICLARKLAA QFFLATVGGS LTYDEKVMVH TLRVFDVRLT SIDEALSISE VWQRYGFACG NAFLEQYISD LIKSKSFMTA 201: VTLLEHFSFR FPGETFLQQM VEDKNFQAAE RWATFMGRPS LCILVQEYGS RNMLKQAYNI INKNYLQHDF PELYHKCKES ALKVLAEKAC WDVAEIKTKG 301: DRQLLKYLVY LAVEAGYLEK VDELCDRYSL QGLPKAREAE VAFVEKSFLR LNDLAVEDVV WVDEVNELRK ATSFLEGCRV VGIDCEWKPN YIKGSKQNKV 401: SIMQIGSDTK IFILDLIKLY NDASEILDNC LSHILQSKST LKLGYNFQCD IKQLALSYGD LKCFERYDML LDIQNVFNEP FGGLAGLTKK ILGVSLNKTR 501: RNSDWEQRPL SQNQLEYAAL DAAVLIHIFR HVRDHPPHDS SSETTQWKSH IVSHMESPKK LKKKTPKSNP TQTSASTFNK PSDNWNKWS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)