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AT5G13240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.805
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : transcription regulators
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
transcription regulators; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: negative regulation of transcription from RNA polymerase III promoter; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Maf1 regulator (InterPro:IPR015257), RNA polymerase III transcriptional repressor, MAF1 (InterPro:IPR017152); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
DNASU:831164eggNOG:COG5046eggNOG:KOG3104EMBL:AY080685
EMBL:AY123009EMBL:CP002688EnsemblPlants:AT5G13240EnsemblPlants:AT5G13240.1
entrez:831164GeneID:831164GO:GO:0005634GO:GO:0006351
GO:GO:0016480Gramene:AT5G13240.1hmmpanther:PTHR22504InterPro:IPR015257
KEGG:ath:AT5G13240OMA:HEASKEWPANTHER:PTHR22504Pfam:PF09174
PIRSF:PIRSF037240Proteomes:UP000006548RefSeq:NP_196828.2SMR:Q8RXT1
STRING:3702.AT5G13240.1TAIR:AT5G13240UniGene:At.43080UniProt:Q8RXT1
Coordinates (TAIR10) chr5:-:4225261..4227152
Molecular Weight (calculated) 25997.50 Da
IEP (calculated) 4.31
GRAVY (calculated) -0.34
Length 224 amino acids
Sequence (TAIR10)
(BLAST)
001: MKFLEYTNLD RLNVFLGHLN LGERTIKGCL EAYSCKHAGS DKRLSLSLEN EMLDYLGKSS DTDSSSPVDL LLSRSSRKAL IYLVLTLYQM YPDYDFSAVK
101: AHQFFSEESW DTFKQIFNNY MFEASKEWTE RNEDGSLLEV IYKALDEVVK LAECEIYVYN PNPNADPFLE EGAIWSFCFL FYNRKLKRVA GFRFSCTSNL
201: ANDAFLTDSP PYEEDEEIFA DMDM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)