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AT4G19500.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.989
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nucleoside-triphosphatases;transmembrane receptors;nucleotide binding;ATP binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nucleoside-triphosphatases;transmembrane receptors;nucleotide binding;ATP binding; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157), Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16950.2); Has 20045 Blast hits to 11477 proteins in 434 species: Archae - 7; Bacteria - 464; Metazoa - 257; Fungi - 40; Plants - 18821; Viruses - 4; Other Eukaryotes - 452 (source: NCBI BLink).
Protein Annotations
EMBL:CP002687EnsemblPlants:AT4G19500EnsemblPlants:AT4G19500.1entrez:827691
ExpressionAtlas:F4JT78Gene3D:3.40.50.10140Gene3D:3.40.50.300Gene3D:3.80.10.10
GeneID:827691GO:GO:0005524GO:GO:0007165GO:GO:0016021
GO:GO:0043531Gramene:AT4G19500.1hmmpanther:PTHR11017hmmpanther:PTHR11017:SF20
InParanoid:F4JT78InterPro:IPR000157InterPro:IPR002182InterPro:IPR003593
InterPro:IPR006936InterPro:IPR011713InterPro:IPR011991InterPro:IPR027417
InterPro:IPR032675iPTMnet:F4JT78OMA:EKECILVPaxDb:F4JT78
Pfam:PF00931Pfam:PF01582Pfam:PF07725Pfam:PF12799
Pfscan:PS50104Pfscan:PS51697PRIDE:F4JT78PROSITE:PS50104
PROSITE:PS51697ProteinModelPortal:F4JT78Proteomes:UP000006548RefSeq:NP_193685.6
SMART:SM00255SMART:SM00382SMR:F4JT78STRING:3702.AT4G19500.1
SUPFAM:SSF46785SUPFAM:SSF52058SUPFAM:SSF52200SUPFAM:SSF52540
TAIR:AT4G19500UniGene:At.2017UniProt:F4JT78
Coordinates (TAIR10) chr4:+:10625787..10630140
Molecular Weight (calculated) 148984.00 Da
IEP (calculated) 5.92
GRAVY (calculated) -0.16
Length 1309 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAASFCGSRR YDVFPSFSKV DVRRSFLAHL LKELDRRLIN TFTDHGMERN LPIDAELLSA IAESRISIVI FSKNYASSTW CLDELVEIHT CYKELAQIVV
0101: PVFFNVHPSQ VKKQTGEFGK VFGKTCKGKP ENRKLRWMQA LAAVANIAGY DLQNWPDEAV MIEMVADDVS KKLFKSSNDF SDIVGIEAHL EAMSSILRLK
0201: SEKARMVGIS GPSGIGKTTI AKALFSKLSP QFHLRAFVTY KRTNQDDYDM KLCWIEKFLS EILGQKDLKV LDLGAVEQSL MHKKVLIILD DVDDLELLKT
0301: LVGQTGWFGF GSRIVVITQD RQLLKAHDIN LIYEVAFPSA HLALEIFCQS AFGKIYPPSD FRELSVEFAY LAGNLPLDLR VLGLAMKGKH REEWIEMLPR
0401: LRNDLDGKFK KTLRNYLPVI RKRVSNEEGG REKLKKGNKK LDLDEEFPGG EIYSDEIPSP TSNWKDTDDF DSGDIIPIIA DKSTTIIPNR RHSNDDWCSF
0501: CEFLRNRIPP LNPFKCSAND VIDFLRTRQV LGSTEALVDR LIFSSEAFGI KPEENPFRSQ AVTSYLKAAR DMTREKECIL VFSCHDNLDV DETSFIEAIS
0601: KELHKQGFIP LTYNLLGREN LDEEMLYGSR VGIMILSSSY VSSRQSLDHL VAVMEHWKTT DLVIIPIYFK VRLSDICGLK GRFEAAFLQL HMSLQEDRVQ
0701: KWKAAMSEIV SIGGHEWTKG SQFILAEEVV RNASLRLYLK SSKNLLGILA LLNHSQSTDV EIMGIWGIAG IGKTSIAREI FELHAPHYDF CYFLQDFHLM
0801: CQMKRPRQLR EDFISKLFGE EKGLGASDVK PSFMRDWFHK KTILLVLDDV SNARDAEAVI GGFGWFSHGH RIILTSRSKQ VLVQCKVKKP YEIQKLSDFE
0901: SFRLCKQYLD GENPVISELI SCSSGIPLAL KLLVSSVSKQ YITNMKDHLQ SLRKDPPTQI QEAFRRSFDG LDENEKNIFL DLACFFRGQS KDYAVLLLDA
1001: CGFFTYMGIC ELIDESLISL VDNKIEMPIP FQDMGRIIVH EEDEDPCERS RLWDSKDIVD VLTNNSGTEA IEGIFLDASD LTCELSPTVF GKMYNLRLLK
1101: FYCSTSGNQC KLTLPHGLDT LPDELSLLHW ENYPLVYLPQ KFNPVNLVEL NMPYSNMEKL WEGKKNLEKL KNIKLSHSRE LTDILMLSEA LNLEHIDLEG
1201: CTSLIDVSMS IPCCGKLVSL NMKDCSRLRS LPSMVDLTTL KLLNLSGCSE FEDIQDFAPN LEEIYLAGTS IRELPLSIRN LTELVTLDLE NCERLQEMPS
1301: LPVEIIRRT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)