AT4G19490.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : VPS54 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Putative homolog of yeast Vps54. Thought to associate with POK and ATVPS53 in a plant GARP-like complex involved in the membrane trafficking system. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
VPS54; INVOLVED IN: retrograde transport, endosome to Golgi; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515), Vps54-like (InterPro:IPR012501); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:10616017..10622934 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 113871.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.17 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1034 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDSHPSLMGR SITNSNRSSL DLGRPSSSSS SSPSPLTKSI SDASSQSLSS ILNNPHGGKS GVYGSDASWV GWWSSSTFVA PAEFAPVAST KLPGSELTRS 0101: DFHGYVSSIS ESHGRFEDIR KHTREESCGF DQESHVSGLA ACLREVPSLY FKEDFALEDG ATFRSACPFS SLNENLALQE KLSQYLDVVE LHLVKEISVR 0201: SDSFFEAQGQ LQDLNVKIVE GCSRIRELKE TIRLLDRNLV DSARQIQELS STRINMLELQ RKLRLILYVN QALSALKLLV ASADCAGALD ITDDLQNLLA 0301: GDELTGLYCF RHLRDHVTSS IDSINSILTS EFMRISIHDT GEIDVLILSA ANIRGSISSN GNTGEEVKLE EEDTSTLCDR LLPLVIGLLR TAKFPSILRM 0401: YRDTLTSEMK NAIKKAVADL LPILVARSLE SDFSHGERSV DDGGGLSLAS KLRTLSSEAF VNLLTAIFKI VQAHLVRASE VKKAIEWILC NIDGHYAADS 0501: VAAAIAVGAV AAETAQEIGF QGGSLVSSPL GKATSKAPPL QGKSSDASSL MNMSRNFRAD VLRENTEAVF AACEVTHGRW AKLLGVRALL HPKLKLQEFM 0601: SIYDLTQEFI TSTEKIGGRL GSSIRGTLQS QAKAFVDSQH ESRMTKLKAV LDQETWDEID VPEEFQSIIS SLFASQRLIS GKVDDADLNS YHSNRLPLNG 0701: SLTSGSGDQN SELRNEKSES SEGSVVSDAQ VKPTVSPESL ERSKAGVSSA TNNQSNQKAH GKSNLFYQGV GYHMVNCGLI LLKMLSEYID MNNSLPALSS 0801: EIVLRVVEVL RFFNTRTCQL VLGAGAMQVS GLKSIKAKHL ALASQVIDFT YTIIPETRRI LFSKVPETRK PLLSVEIDKV AQDFRIHRDE IYTKLVQIMR 0901: ERLLAHLHGL PKVVEGWNRP PDTNKQTKEF AWPLTREVGY LHRVLSETLH EADVQAIFRQ VISIIHTQTS QTLTNLEISS TEAKKRLKLH VELILKCIRS 1001: LPSDNANQSD IPNWGQLDEF FAEHFREEEA GEAE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)