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AT4G19520.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.985
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : disease resistance protein (TIR-NBS-LRR class) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT3G51560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886EMBL:CP002687EnsemblPlants:AT4G19520EnsemblPlants:AT4G19520.1
entrez:827694Gene3D:3.40.50.10140Gene3D:3.40.50.300Gene3D:3.80.10.10
GeneID:827694GO:GO:0007165GO:GO:0043531Gramene:AT4G19520.1
hmmpanther:PTHR32096hmmpanther:PTHR32096:SF18InParanoid:F4JT82InterPro:IPR000157
InterPro:IPR002182InterPro:IPR011713InterPro:IPR011991InterPro:IPR027417
InterPro:IPR032675iPTMnet:F4JT82KEGG:ath:AT4G19520ncoils:Coil
OMA:WEDTIRHPaxDb:F4JT82Pfam:PF00931Pfam:PF01582
Pfam:PF07725Pfscan:PS50104PRIDE:F4JT82PROSITE:PS50104
ProteinModelPortal:F4JT82Proteomes:UP000006548RefSeq:NP_193687.3SMART:SM00255
STRING:3702.AT4G19520.1SUPFAM:SSF46785SUPFAM:SSF52058SUPFAM:SSF52200
SUPFAM:SSF52540TAIR:AT4G19520UniGene:At.2018UniProt:F4JT82
Coordinates (TAIR10) chr4:-:10639488..10647070
Molecular Weight (calculated) 196917.00 Da
IEP (calculated) 8.40
GRAVY (calculated) -0.18
Length 1744 amino acids
Sequence (TAIR10)
(BLAST)
0001: MVDGKEVYIS FNRWEDTIRH SFVSHLSAEF QRKGVSVFAS EDSASDDRFA EESDAAIAKA RVSVVIFSEN FASSKGCLNE FLKVSKCRRS KGLVVVPVFY
0101: GLTNSIVKKH CLELKKMYPD DKVDEWRNAL WDIADLRGGH VSSHKRSDSE LVEKIVADVR QKLDRRGRIG VYSRLTKIEY LLCKQPGCII RSLGIWGMAG
0201: IGKTTLARAA YDQLSRDFEA SCFIEDFDRE FQEKGFFGLL EKQLGVNPQV TRLSILLKTL RSKRILLVLD DVRKPLGATS FLCEFDWLGP GSLIIVTSQD
0301: KQVLVQCQVN EIYKVQGLNK HESLQLFSRC AFGKDVPDQN LLELSMKFVD YANGNPLALS ICGKNLKGKT PLDMKSVVLE LKRHLSDKIF VKLKSSYDAL
0401: SVSEKEIFLD IVFTFRGANV DNVMQSLAGC GFFPRVGIEA LVDKSFVTVS ENRVQVNNLI YDVGLKIIND QSDEIGMCYR FVDASNSQSL IEHKEIRESE
0501: QGYEDVKAIN LDTSNLPFKG HIAFQHMYNL RYLTIYSSIN PTKDPDLFLP GDPQFLPPEL RLLHWTCYPL HSFPQNFGFQ YLVELNMPCS KLKKLWGGTK
0601: NLEVLKRITL SCSVQLLNVD ELQYSPNIEK IDLKGCLELQ SFPDTGQLQH LRIVDLSTCK KIKSFPKVPP SIRKLHLQGT GIRDLSSLNH SSESQRLTRK
0701: LENVSSSNQD HRKQVLKLKD SSHLGSLPDI VIFESLEVLD FSGCSELEDI QGFPQNLKRL YLAKTAIKEV PSSLCHHISK LVKLDMENCE RLRDLPMGMS
0801: NMKYLAVLKL SGCSNLENIK ELPRNLKELY LAGTAVKEFP STLLETLSEV VLLDLENCKK LQGLPTGMSK LEFLVMLKLS GCSKLEIIVD LPLNLIELYL
0901: AGTAIRELPP SIGDLALLDT LDLKNCNRLR HLPMEMHNLN PLKVLDLSNC SELEVFTSSL PKVRELRPAP TVMLLRSKLP FCFFIFYEHR VTLSLYKARL
1001: QYIPEEIRWM PSLKTLDLSR NGFTEVPVSI KDFSKLLSLR LRYCENLRSL PQLPRSLQLL NAHGCSSLQL ITPDFKQLPR YYTFSNCFGL PSHMVSEVLA
1101: NAPAIVECRK PQQGLENALA CSFCLPSPTS RDSKLYLQPG SSTMIILNPK TRSTLVGFAI LVEVSFSKDF HDTAGLGFRC VCRWNDKKGH AHKRDNIFHC
1201: WAPGEVVPKI NDDHMFVFFD LKMHPSILFE GDVFGILADL VVFEIFPVNK QEMHVGDSCT ITKCGVYVIN DAAGSSSGNT MTPQCSSMDS LKLLDGKGKK
1301: RLRVNYAGLK QREKALFLYI ACLLGGEKAD LLAQFLASTD FVIESTLEDL AGRYLIDISS NGEVMMPPLQ RNFSREIIHM LPASTKELVS MASGSPCNRN
1401: NDVFVSFHGK DFRKQFISDF LKKLVYKGIR ICIGDKILSR SLINKVIKES SIAVVVFSEN YASSSLCLLQ LMEIMKCWEE LGQVVMPIFY KVNPSDIRNQ
1501: SGHFGKGFKK TCKKTINDER QRWSRALTDA ASIAGECSLN WASDADMIEK VANDIRKKLI SSKKLGKQIQ RVDCDHDNPW ETEFNKCIER FFQLPYDGNH
1601: DESLVSLTTE KVIDMKQTLK EIYQITKVKL KNNLVGRRHI NNICFMHILY EKCEERSSFN PTSLHTLYDN GIPYQVYTKR KKHMSGEEKA PIGGCVGCFY
1701: MGQNQGITKA GGGRTMPTAY PAAPQANQGY NAGAQPYPPT AYAV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)