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AT4G17250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.625
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23667806 (2013): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47580.1); Has 31 Blast hits to 31 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEDIeggNOG:ENOG410Y9G4EMBL:AY057681EMBL:AY143931
EMBL:CP002687EnsemblPlants:AT4G17250EnsemblPlants:AT4G17250.1entrez:827439
ExpressionAtlas:Q93ZA8GeneID:827439GO:GO:0010286GO:GO:0016021
Gramene:AT4G17250.1hmmpanther:PTHR35307hmmpanther:PTHR35307:SF1HOGENOM:HOG000090500
OMA:IDEWREFPhylomeDB:Q93ZA8Proteomes:UP000006548RefSeq:NP_567526.4
STRING:3702.AT4G17250.1TAIR:AT4G17250TMHMM:TMhelixUniGene:At.19726
UniProt:Q93ZA8
Coordinates (TAIR10) chr4:+:9671104..9673329
Molecular Weight (calculated) 83946.70 Da
IEP (calculated) 8.69
GRAVY (calculated) 0.03
Length 741 amino acids
Sequence (TAIR10)
(BLAST)
001: MGCDSHGNLS DTEFSKPLPS IGVYVAAASL ICGVAMFSDL LHGFRHRKFW FPCKFFSLNA TTLTFISVCV KLSLDLNTSM PSRQDQLAKL SSSVFVCTVM
101: ANSMPSLGYM VTQDLLMNLT ALGILVITDV VNICIQLGTG AIYVFPQEHA LVIILMLLMF MILSFSAITV PATKRFLELK YKKRYEFALK QCPSYTERRR
201: GVPKLKEDLM KFWMMAHTSS PQFVMARSVT CTTTGFLCFL IAITLAEAMV RSYFLQPRSL GFCNGDSDYK WSTTLVLVSQ TAAVAIGTVA PASRWLKAVN
301: FRCPFRNKKS LKDELRVESY WVECLAEKKE RPLNFWMLHG RCSRKLAHDL NRLMLDICIA TQYGIVLASK FLRFITVYCS SRILLCCFHF TFKSDSVANA
401: ESSGSNPSTR QFVLHLEGEE EMVDYMARSN RVATDHLIQK GRKKQPVNLI ELLEATTFIS KGFEGIRDFD SDEVSSLASG EPPNSWALPL VTLTSIAVAL
501: PNIKPCSLKK LVKAVNEALV YVNKFEEVLD IEGELANSRK AAEVVWLGVD LYHKWLNVDL RKLSKQHSKT PQEVLKELVD IAQKEFTESW EKNRILCMKH
601: KPSHWPIKTQ AANSMYRISQ TLLMKYESRN IETEETLLKD VEKMVSDIVS GCFCNTAQVI GMKCLVTAVE VREASVREAA MHLGRTEKIL EIVDRRCMPA
701: LSHHKVAKID EWREFYRTNK SITFTHPSSQ CTTRELIINL E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)