suba logo
AT5G62020.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : heat shock transcription factor B2A
Curator
Summary (TAIR10)
member of Heat Stress Transcription Factor (Hsf) family
Computational
Description (TAIR10)
heat shock transcription factor B2A (HSFB2A); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to chitin; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT4G11660.1); Has 2147 Blast hits to 2134 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 368; Fungi - 473; Plants - 782; Viruses - 0; Other Eukaryotes - 524 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5169eggNOG:KOG0627EMBL:AB016880EMBL:AJ251867
EMBL:AK229690EMBL:BT008542EMBL:BT008658EMBL:CP002688
EnsemblPlants:AT5G62020EnsemblPlants:AT5G62020.1entrez:836322ExpressionAtlas:Q9SCW4
Gene3D:1.10.10.10GeneID:836322Genevisible:Q9SCW4GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0010200GO:GO:0043565
Gramene:AT5G62020.1hmmpanther:PTHR10015hmmpanther:PTHR10015:SF168HOGENOM:HOG000242480
InParanoid:Q9SCW4InterPro:IPR000232InterPro:IPR011991InterPro:IPR027725
KEGG:ath:AT5G62020KO:K09419ncoils:CoilOMA:NRELTQM
PANTHER:PTHR10015PaxDb:Q9SCW4Pfam:PF00447Pfam:Q9SCW4
PhylomeDB:Q9SCW4PRIDE:Q9SCW4PRINTS:PR00056PRO:PR:Q9SCW4
PROSITE:PS00434ProteinModelPortal:Q9SCW4Proteomes:UP000006548Reactome:R-ATH-3371453
Reactome:R-ATH-3371511Reactome:R-ATH-3371568Reactome:R-ATH-3371571RefSeq:NP_201008.2
scanprosite:PS00434SMART:SM00415SMR:Q9SCW4STRING:3702.AT5G62020.1
SUPFAM:SSF46785TAIR:AT5G62020tair10-symbols:AT-HSFB2Atair10-symbols:HSFB2A
UniGene:At.5973UniProt:C0SVV5UniProt:Q9SCW4
Coordinates (TAIR10) chr5:+:24916212..24917194
Molecular Weight (calculated) 34052.60 Da
IEP (calculated) 6.07
GRAVY (calculated) -0.81
Length 299 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSPPVDAMI TGESSSQRSI PTPFLTKTFN LVEDSSIDDV ISWNEDGSSF IVWNPTDFAK DLLPKHFKHN NFSSFVRQLN TYGFKKVVPD RWEFSNDFFK
101: RGEKRLLREI QRRKITTTHQ TVVAPSSEQR NQTMVVSPSN SGEDNNNNQV MSSSPSSWYC HQTKTTGNGG LSVELLEENE KLRSQNIQLN RELTQMKSIC
201: DNIYSLMSNY VGSQPTDRSY SPGGSSSQPM EFLPAKRFSE MEIEEEEEAS PRLFGVPIGL KRTRSEGVQV KTTAVVGENS DEETPWLRHY NRTNQRVCN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)