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AT5G53130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cyclic nucleotide gated channel 1
Curator
Summary (TAIR10)
member of Cyclic nucleotide gated channel family
Computational
Description (TAIR10)
cyclic nucleotide gated channel 1 (CNGC1); FUNCTIONS IN: inward rectifier potassium channel activity, cyclic nucleotide binding, intracellular cyclic nucleotide activated cation channel activity, calmodulin binding, cation channel activity; INVOLVED IN: potassium ion transport, calcium ion transport; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 13 (TAIR:AT4G01010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20638eggNOG:ENOG410XPSEeggNOG:KOG0498EMBL:AB025622
EMBL:AF370139EMBL:BT000991EMBL:CP002688EMBL:Y16327
EnsemblPlants:AT5G53130EnsemblPlants:AT5G53130.1entrez:835393Gene3D:2.60.120.10
GeneID:835393Genevisible:O65717GO:GO:0005216GO:GO:0005886
GO:GO:0016021GO:GO:0030552GO:GO:0030553GO:GO:0042391
Gramene:AT5G53130.1hmmpanther:PTHR10217hmmpanther:PTHR10217:SF527HOGENOM:HOG000238338
InParanoid:O65717InterPro:IPR000595InterPro:IPR005821InterPro:IPR014710
InterPro:IPR018490KEGG:ath:AT5G53130KO:K05391ncoils:Coil
OMA:WYILSIQPaxDb:O65717Pfam:O65717Pfam:PF00027
Pfam:PF00520Pfscan:PS50042PhylomeDB:O65717PIR:T51354
PRIDE:O65717PRO:PR:O65717PROSITE:PS50042ProteinModelPortal:O65717
Proteomes:UP000006548Reactome:R-ATH-2485179Reactome:R-ATH-2514859Reactome:R-ATH-5620916
RefSeq:NP_200125.1SMART:SM00100SMR:O65717STRING:3702.AT5G53130.1
SUPFAM:SSF51206SUPFAM:SSF81324TAIR:AT5G53130tair10-symbols:ATCNGC1
tair10-symbols:CNGC1TCDB:1.A.1.5.5TMHMM:TMhelixUniGene:At.21042
UniGene:At.49166UniProt:O65717
Coordinates (TAIR10) chr5:-:21537830..21540490
Molecular Weight (calculated) 83101.70 Da
IEP (calculated) 9.39
GRAVY (calculated) -0.19
Length 716 amino acids
Sequence (TAIR10)
(BLAST)
001: MNFRQEKFVR FQDWKSDKTS SDVEYSGKNE IQTGIFQRTI SSISDKFYRS FESSSARIKL FKRSYKSYSF KEAVSKGIGS THKILDPQGP FLQRWNKIFV
101: LACIIAVSLD PLFFYVPIID DAKKCLGIDK KMEITASVLR SFTDVFYVLH IIFQFRTGFI APSSRVFGRG VLVEDKREIA KRYLSSHFII DILAVLPLPQ
201: MVILIIIPHM RGSSSLNTKN MLKFIVFFQY IPRFIRIYPL YKEVTRTSGI LTETAWAGAA FNLFLYMLAS HVFGAFWYLF SIERETVCWK QACERNNPPC
301: ISKLLYCDPE TAGGNAFLNE SCPIQTPNTT LFDFGIFLDA LQSGVVESQD FPQKFFYCFW WGLQNLSSLG QNLKTSTYIW EICFAVFISI AGLVLFSFLI
401: GNMQTYLQST TTRLEEMRVK RRDAEQWMSH RLLPENLRKR IRRYEQYKWQ ETRGVDEENL LSNLPKDLRR DIKRHLCLAL LMRVPMFEKM DEQLLDALCD
501: RLQPVLYTEE SYIVREGDPV DEMLFIMRGK LLTITTNGGR TGFLNSEYLG AGDFCGEELL TWALDPHSSS NLPISTRTVR ALMEVEAFAL KADDLKFVAS
601: QFRRLHSKQL RHTFRYYSQQ WKTWAACFIQ AAWRRYIKKK LEESLKEEEN RLQDALAKEA CGSSPSLGAT IYASRFAANI LRTIRRSGSV RKPRMPERMP
701: PMLLQKPAEP DFNSDD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)