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AT4G09680.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : conserved telomere maintenance component 1
Curator
Summary (TAIR10)
Encodes CTC1 (Conserved Telomere Maintenance Component 1) involved in telomere maintenance.
Computational
Description (TAIR10)
conserved telomere maintenance component 1 (CTC1); Has 50 Blast hits to 32 proteins in 13 species: Archae - 0; Bacteria - 3; Metazoa - 1; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFY0eggNOG:ENOG4111YBPEMBL:CP002687EnsemblPlants:AT4G09680
EnsemblPlants:AT4G09680.1entrez:826554GeneID:826554GO:GO:0000723
GO:GO:0000781Gramene:AT4G09680.1hmmpanther:PTHR14865InterPro:IPR028262
OMA:IILNACWPaxDb:F4JKR3Pfam:PF15491PRIDE:F4JKR3
Proteomes:UP000006548RefSeq:NP_192706.5STRING:3702.AT4G09680.1TAIR:AT4G09680
tair10-symbols:ATCTC1tair10-symbols:CTC1UniGene:At.33681UniProt:F4JKR3
Coordinates (TAIR10) chr4:+:6116819..6123017
Molecular Weight (calculated) 142189.00 Da
IEP (calculated) 6.84
GRAVY (calculated) -0.08
Length 1274 amino acids
Sequence (TAIR10)
(BLAST)
0001: MENTTILTVK DLVNEGIAVT GASSLFSSAA SHSSSESTST NPKSHPGAVD SDFSRKFLTP LNYPTVIFGT VALPSETLKC PNRYCFRFTD GDLTICCDIL
0101: GFEFRAIGSK ICVLSWNFLP MNHSGGFLEI INWKFVDSGS LLSRCSGISS FPLIPSLYSS QNGDRKSRYS VCGVLESISP VSVVPCMDGV SSDSVNLPGF
0201: LVHVMACECK VYSRDAIDCG HAFERSVFVY FCGLEAASWH PVVMKLVGRN VALSGLKRKL VYVRGDSLLV FVTTENSVLH PPWLSKKGTV SKTVVDRRGN
0301: CGSYRGYVRG LYLKGKLVEM DEDVWLLLTD QILNRSHSIR TGSLIFIRNV HFVNTKFPWG EVLILGACFK TSITVEFFSP FETSCLVDSC RQTSLSLYVE
0401: SLSFPARLWT LLVRISFEKF NRMPSDKEIL RSCQKDELTK MYAESRIPPS MFQPRGGIFT EFCMHESCGC NSEARDCNLK LVMPISSFVH HVKVMLNELL
0501: SQIKKDFSAS DCLSHSSSTW KRYNNTNPKT LRSEDTGVIL LGRLKISSSG RLQLHDRTSS IDVLTPDLLS DRNASRICEV PDYYLIIEGI PESMLHMPFL
0601: KNPFRCSSVL NPTPLAIKNT LTVPFSLSLG TASCKHLLKH HPFDWRHDFN EFKEGFFHLF RVTHKFPILK NGHPGMPDCT SVFIEALVLP WDLICTVTEE
0701: EAAAPNFEEH DTSQEIRPHK RCKTNNGLQS QSFLSVPHEI SCQMTIRCAS SHCLVATATL SNLTENKSGK MHSAMRVLLE FIPECSNYYG LQIGGCYLMK
0801: HGSDDSFCVG RSGISNNDKI NFRPETRLWS LEFSFDEVLT HDGSMDVHPL VSSQPSFAVE QQNVSSRQPC SDVSLLLPYD AKGLFSVFLN DLEGLNKPLA
0901: AGKDNNNISC CTQSETIMHA EPSRLLPSNS LFPEGNLATF RGDVVAVDAV TSSVVDVSSS YCINVLVNHQ MVKIFGPLRR HSYLTGFGFG TNATFYRILG
1001: TGEQNSFVLT SASFIKINSR KALDSPPLEK PTHGAALCLP KITPQEFVPC ILAGPACNSF SGNEDNQQIK FACKQQVLSV YLLVLQTRSD DPSENECRNN
1101: IDIPLAGFVV DDGSSTYLCW TSGERAFTIL RLHEELPEET IDVVQWTRRY SNWGTTAYHL DQIVRVHKRI VMKCNGSQID VLFQDITIAV TSDQLLTKSE
1201: DKFLKWLILN AISGPIWEVA ASSMDMKMIE HLEREQCVEM ETSRYNLQSV WGNEVCQVDP LVRAWSLLQG LLNS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)