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AT4G01860.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.993
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin family protein / WD-40 repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G43770.1); Has 18202 Blast hits to 10734 proteins in 529 species: Archae - 38; Bacteria - 4707; Metazoa - 5622; Fungi - 3824; Plants - 1793; Viruses - 0; Other Eukaryotes - 2218 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZJ6JeggNOG:KOG0974EMBL:AY081348EMBL:BT009667
EMBL:CP002687EnsemblPlants:AT4G01860EnsemblPlants:AT4G01860.1EnsemblPlants:AT4G01860.2
entrez:827918Gene3D:2.130.10.10GeneID:827918GO:GO:0080008
Gramene:AT4G01860.1Gramene:AT4G01860.2hmmpanther:PTHR14344HOGENOM:HOG000029966
InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775
KEGG:ath:AT4G01860OMA:GCICYFEPfam:PF00400Pfscan:PS50082
Pfscan:PS50294PhylomeDB:Q8RXC4PROSITE:PS00678PROSITE:PS50082
PROSITE:PS50294Proteomes:UP000006548RefSeq:NP_192095.2RefSeq:NP_849536.1
scanprosite:PS00678SMART:SM00320SMR:Q8RXC4STRING:3702.AT4G01860.1
SUPFAM:SSF50978TAIR:AT4G01860UniGene:At.44027UniProt:Q8RXC4
Coordinates (TAIR10) chr4:-:801713..808018
Molecular Weight (calculated) 144757.00 Da
IEP (calculated) 5.83
GRAVY (calculated) -0.20
Length 1308 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAEENSRRKW NPHAGPYLGE VSSLAFLNLP QHVSSIPYLL AGSGSEILLY DLSSGELIRS FQVFEGVRVH GTVCSKSFVH SAERYTYKLV IFGEKKVKIF
0101: SLIVELASSS GEISVNLENF ESLPRLSNWV FDVCFLQDST GSLEEEDKLL AIGCSDNSLS IWDVKESRMA FEIQSPERCL LYTMRLWGDS ISTLRIASGT
0201: IFNEIIVWRA VGLDGDNVDH GHYSASHMLR LTGHEGSIFR IVWSLDGSKI VSVSDDRSAR IWEIDSQEVV GPVLFGHSVR VWDCCISDSL IVTAGEDCTC
0301: RVWGVDGTQL EVIKEHIGRG IWRCLYDPNS SLLVTAGFDS AIKVHQLHNR GSETSLDAVG VLNSPDKLEY FSTCLPNSTK HTGLTDSKSE YVRCLQFTQE
0401: DTIYVATNHG CLYHARLLSS GNVRWTELVR IPEEGPIITM DVMSGGKVRE SCALDDWVAL GDGKGNMTIV RVIGDMYNPH AGLNQSWKAS PERQLLGAFW
0501: CKSLGYRFVF SCNPRGLLKL WKLSGSLESA AETYDVSLLA EFSSGFGKRI MCVDASVEDE VILCGDLRGN ITLFPLTKDM LHGVSVSSEL KIPSLKYFKG
0601: AHGISTVSSL SVARLTSNKA EICSTGADGC ICYFEYDREM QTLEFMGLKQ LKELNLVQSV CQGVQFSEDH PNNDYAAGFA STDFILWNLT AETKVTQISC
0701: GGWRRPHSFY LGEIPEWQNC FAYVKDDVIH IHRHWVGGQK TKVFPLNLHT QFHGRELHSL CFISTDTKAG FDSEESKISD RSSWIATGCE DGSVRLSRYA
0801: SEFGNWSTSE LLGEHVGGSA VRSVCCVSNM HMMSSDVPNL PDMCDQDYAV DDCESPRLLI SVGAKRVVTS WLLRNGRHKK KGESCISDNG HNRASSEVSP
0901: VTFQWLATDM PTKYRPCGKI EKSPKLEGVE EDTSANVTKL GSNTYNEREN YEDDWRYMAA TAFLVKCVGS RLTICFIAVA CSDATLTLRA LVLPHRLWFD
1001: VASLVPLKSP VLSLQHAVVP LDPPHEGNTP YSDVYLLISG ATDGSIGFWD VTKCVEAFVK QVSSIHIEKY IDCQLRPRTG RGSQGGRKWK LLGSKISKRA
1101: QENSNSVGEA AEEDPASSLE LTNDHPQENG KNEDADSLPE TSEIKTSHVV KNAHQSGVNC LHVSRSNSSP SYGNGLMFNV ISGGDDQALH CLSFNILSSS
1201: NNRATISEIM DLNQTPSYRI MLTDRGGIAS AHSSAIKGVW MDTNWVFSTG LDQRVRCWFL EKDGKLIEHA HIVISVPEPE ALDAKAIDEN RYQIAVAGRG
1301: IQMVEFSG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)