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AT2G24960.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.977
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IM0ReggNOG:ENOG410Z0N6EMBL:AC006585EMBL:CP002685
EnsemblPlants:AT2G24960EnsemblPlants:AT2G24960.1entrez:817035ExpressionAtlas:Q9SK37
GeneID:817035Gramene:AT2G24960.1hmmpanther:PTHR31704hmmpanther:PTHR31704:SF10
HOGENOM:HOG000064673InterPro:IPR024752OMA:HPHARTYPfam:PF12776
PhylomeDB:Q9SK37PIR:E84642Proteomes:UP000006548RefSeq:NP_180068.1
TAIR:AT2G24960UniGene:At.52902UniProt:Q9SK37
Coordinates (TAIR10) chr2:+:10617263..10620034
Molecular Weight (calculated) 92537.20 Da
IEP (calculated) 5.21
GRAVY (calculated) -0.59
Length 797 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNQTTCNDR TRTYWTPTME RFFIDLMLEH LHRGNRTGHT FNKQAWNEML TVFNSKFGSQ YDKDVLKSRY TNLWKQYNDV KCLLDHGGFV WDQTHQTVIG
101: DDSLWSLYLK AHPEARVYKT KPVLNFSDLC LIYGYTVADG RYSMSSHDLE IEDEINGESV VLSGKESSKT EWTLEMDQYF VEIMVDQIGR GNKTGNAFSK
201: QAWIDMLVLF NARFSGQYGK RVLRHRYNKL LKYYKDMEAI LKEDGFSWDE TRLMISADDA VWDSYIKDHP LARTYRMKSL PSYNDLDTIF ACQAEQGTDH
301: RDDGSAAQTS ETKASQEQNS DRTRIFWTPP MDYHLIDLLV EQVNNGNRVG QTFITSAWNE MVTAFNAKFG SQHNKDVLKN RYKHLRRLYN DIKFLLEQNG
401: FSWDARRDMV IADDDIWNTY IQACHILFLF KISVICLCLQ MKHVQAHPEA RSYRVKTIPS YPNLCFIFGK ETSDGRYTRL AQAFDPSPAE TVRMNESGST
501: DGFKDTRSFQ KVVYTSNEKN DYPCSNIGPP CIEWTRVMDH CLIDLMLEQV SRGNKIGETF TEQAWADMAE SFNAKFGLQT DMFMLENRYI LLMKERDDIN
601: NILNLDGFTW DVEKQTIVAE DEYWEAYIKE HPDATIYKGK TLDSYGNLCK LNEHLSQESF NCENLMIELE NYGNEMEIVD DFSSPHKQQN KRPNPITPPL
701: GIVVCKAQKT GVETRKPLCE TEGDDDDCTK PMPQIEIYSR IGNALDALQA LPDMDDELLL DACDLLEDER KAKTFLALDV SLRRKWLVRK LRPSANV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)