suba logo
AT4G20350.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.692
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : oxidoreductases
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
oxidoreductases; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); Has 320 Blast hits to 320 proteins in 141 species: Archae - 0; Bacteria - 19; Metazoa - 112; Fungi - 69; Plants - 54; Viruses - 3; Other Eukaryotes - 63 (source: NCBI BLink).
Protein Annotations
DNASU:827783eggNOG:ENOG410XR69eggNOG:KOG3200EMBL:CP002687
EnsemblPlants:AT4G20350EnsemblPlants:AT4G20350.1entrez:827783ExpressionAtlas:F4JUV5
Gene3D:2.60.120.590GeneID:827783GO:GO:0016491Gramene:AT4G20350.1
hmmpanther:PTHR13069hmmpanther:PTHR13069:SF11InterPro:IPR005123InterPro:IPR027450
InterPro:IPR032862KEGG:00260+1.14.11.-KEGG:00361+1.14.11.-KEGG:00904+1.14.11.-
PANTHER:PTHR13069:SF11PaxDb:F4JUV5Pfam:PF13532Pfscan:PS51471
PROSITE:PS51471ProteinModelPortal:F4JUV5Proteomes:UP000006548RefSeq:NP_567598.2
STRING:3702.AT4G20350.2SUPFAM:SSF51197TAIR:AT4G20350UniGene:At.3548
UniProt:F4JUV5
Coordinates (TAIR10) chr4:+:10988730..10989733
Molecular Weight (calculated) 21024.10 Da
IEP (calculated) 6.50
GRAVY (calculated) -0.30
Length 186 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRVLFHKSV MPPWLTKITA EIHESSGLFP SAINHVLINE YHPDQGIMPH QDGPAYFPVV AILSLGSPVV MDFTPHLRLR SGDGYISKDQ SPCAESCAPE
101: RDSFSVLLMP QSLLIFKDDA YSDFLHGISD SPTQCYNQVV NEAEALAYSN EEDSRKDGDK IFHRDQTRVS LTCRLVPKVR KNLFRF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)