AT5G07400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : forkhead-associated domain-containing protein / FHA domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
forkhead-associated domain-containing protein / FHA domain-containing protein; FUNCTIONS IN: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, phosphoric diester hydrolase activity, zinc ion binding, nucleic acid binding; INVOLVED IN: DNA repair; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, seed; EXPRESSED DURING: F mature embryo stage; CONTAINS InterPro DOMAIN/s: Tyrosyl-DNA phosphodiesterase (InterPro:IPR010347), SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253), HIP116, Rad5p N-terminal (InterPro:IPR014905); BEST Arabidopsis thaliana protein match is: tyrosyl-DNA phosphodiesterase-related (TAIR:AT5G15170.1); Has 394 Blast hits to 361 proteins in 119 species: Archae - 0; Bacteria - 2; Metazoa - 165; Fungi - 89; Plants - 76; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:2340814..2345321 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 121383.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.85 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1084 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKRRQCEKVV IRIHNIGTPL ISGSSGLPLE LFHIQSDRPY TIGRSSSDGF CDFVIDHSSI SRKHCQILFD SQSHKLYIFD GVIHLPSGSF SQVYDEFRRR 0101: LVGVEDLGNL KFRASLNGVY VNRVRVRKSK VQEVSIDDEV LFFCGKEGLC CKDGRVGFVV QEIVFEGRDA SIVSVSSGHS RGTFSSGKRS KRVFAPMENE 0201: INSPVSGFYP PKAVGVVERV NSLVSYCRHI LKSDDPLSCL RLSIISHSGK ECLSCCTSKM FRSKVGIVAD DRGVKSAEIN HDMGHGLSGL RLSIERPNSN 0301: LHVDRRLGVS DLISEIENEF AACTFISDKT RTMLPFDGEK VNTPDITCIN KEKSYQSSLQ APGKNFYLNR LQYIEQSSTG CQRVVSLPEL LHPVESIQQI 0401: FLATFTSDIL WFLTCCDTPR HLPVTIACHN AERCWSSNPD ARTAVPLPNY PNVTMVYPPF PEEIAFGKDR TNRGIACHHP KLFILQRKDS IRVIITSANL 0501: VARQWNDVTN TVWWQDFPRR ADPDLLSLFG HCQRETNHGL KPDFCAQLAG FAASLLTDVP SQAHWILEFT KYNFEHSAGH LVASVPGIHS YKPSYLTESG 0601: CSNTIFSEEF LGSVEASVVG LSYLFRSAND STGAQLKRLA SYIRRTRENS LGMLELVLRR NTNVPADPNA VRVLVPNPDD DSRDDFVQLG FLPRSIAKWV 0701: SPLWDIGFFK FVGYVYRDEV LGAASCRSNE KVQLVLHVLQ GVSISDMSKL IQPYHVVALC SLIASLQRCT GIWRLQEVLG RYKWPESQES DFVYSASSIG 0801: GSATTGFQAD FSSAAGKKAL QHFDSQESDP EWGCWSNREE REAPSIKIIF PTIERVKNGH HGVLSSRRLL CFSEKTWQKW RHSNVLHDAV PNPQDRVGHP 0901: MHIKVARRLF TSTRGSRSSS FGWVYSGSHN FSAAAWGQTI SRSSRNNQDQ SNNAIRAVKK LRVCNYELGI VFVFPPPHEE TDSCEGSKID DIVLPFVVPA 1001: PKYGWSDKPA TGLAMREAFA EFREGSTSFC GESEVEEEVE EEEEEEADAE GRGEFVAEEE KQEEEAYAEA LWSQVESSSS SLSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)