AT4G15730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : CW-type Zinc Finger | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CW-type Zinc Finger; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: CW-type Zinc Finger (TAIR:AT3G62900.1); Has 395 Blast hits to 319 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 0; Plants - 166; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:8951887..8957214 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 116704.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.67 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||||||||||
| Length | 1059 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGEDYELEEG EMNCSSDEAV VDLDVDLSYI DKKVQNVLGH LQKGFGEEAR DRFGPEIFDY GSFLPTYKRL PAVPSCQRSS LGNHAVQRIS NSLPGKNVVQ 0101: KFQSPPATSC KLVRNQDPQN YQTSGSLLAQ APGKVPINKG NARTPANDLP HNKPIRVRIK MGSEILSQSV AMVCKDLGLD GSPNSPPRIS QDDSSRMLPH 0201: TSLGKTSESP SRILQEMTAI SVPEDLLMSP LPDSLLLVKD KKKQYTLLDN QPMIKTGKKS SIQIQNKFSD VLCCEKTPIG RRRKEVDCFH ATTWNETKKH 0301: KVLSTGQLAR DNSACGLGGA SLTTDGFTTK SNLQEGCRKD GESDPRVANK IKFVGLHAVK EKKTCPTKLQ QNRSKYRIGD KVLSKMPLKD AAYIGHNSMD 0401: TGFDFAVAPS STSVDLDYWA QCESCEKWRL LPYDLNTEKL PDKWLCSMQT WLPGMNHCGV SEEETTNAIK SFHASEGHGP DTGVKLLSDV RNADKIYQPL 0501: TSGSLPNPIE KKSNVEDLSQ GVSSNILVDA AKPMRSNPHI FKNKNMKLPG ETPTATQISA DLSHDFFQDK IDQKAKRRAA GAGCQIKVKK KKEADKEESD 0601: GSKHIKTGDG NKLARVIKAE EIHWNQDPKW TPAERKRKRH DNDFCTLNVE RDPKKRLLVS KKKPDHKPQL ITASGSLCTK AQGNINSTVR KIRLMGYKQG 0701: KDGKNSKLFA DGEENEPSME KAVTTKISVH ESKANQRNEL FQADCFQEHL NGDASCRYFS GGSGQISGIE TSNSSKVLGS HKSGRMYVEE VKASPVESVS 0801: SSPARSSCPT NDILQEAEKL RKLADCFKSS GFEYEYKEIN FKAALRFLLG ASVLEMCSTD NVEVGKMSHI EAYHTAAKLS ESCAHQYETS QEMAAATLAY 0901: KCTEVACMRL VYGRSLGLSG EWNELQKMVQ MTPQGESPSS SASDVDSFNH QGVIKKSAKT RRGLSHVAGN LLPVARSQLN FVPLLDFTGS MNLAMEASAK 1001: SQNAFKAVTD TSEERKHGDC ISAIKKVVDF SFHDVEALIK MIEVAMDALS SSRFGGPKC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)