suba logo
AT3G45880.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.962
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, root, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G19840.2); Has 1138 Blast hits to 1132 proteins in 270 species: Archae - 0; Bacteria - 266; Metazoa - 428; Fungi - 156; Plants - 146; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YDQ9eggNOG:KOG2508EMBL:AK226677EMBL:CP002686
EnsemblPlants:AT3G45880EnsemblPlants:AT3G45880.1entrez:823731GeneID:823731
Gramene:AT3G45880.1hmmpanther:PTHR12461hmmpanther:PTHR12461:SF2InterPro:IPR003347
KEGG:ath:AT3G45880KO:K19219OMA:CIIRNAFPfam:PF13621
Pfscan:PS51184PhylomeDB:Q0WVR4PROSITE:PS51184Proteomes:UP000006548
RefSeq:NP_190174.2SMART:SM00558SMR:Q0WVR4STRING:3702.AT3G45880.1
SUPFAM:SSF51197TAIR:AT3G45880UniGene:At.43850UniGene:At.53778
UniProt:Q0WVR4
Coordinates (TAIR10) chr3:-:16869855..16871544
Molecular Weight (calculated) 39124.70 Da
IEP (calculated) 4.66
GRAVY (calculated) -0.34
Length 345 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKEIENLWR EVRELSLGTK IDRFDSQPSP VKFLRNYVSQ SKPCVISKAI THWPALKLWS DPAYLTGALS DDVVSLHLTP NGCADAVTGD SDLCFASAHV
101: EKVLFPEALK VVQSSCKGLK VGYLQQQNDC FRTEYSTVAL DCDGDIEWAT EAFGCSPEAV NLWIGTDDSV TSFHKDHYEN LYAVVSGEKH FLLLPPTDVH
201: RLYIEQYPAA NYSYHRDTDA FKLEVEEPVR HVPWSSVDPY PSPEKEASER LKFPLFFDGP KPFHCTVKAG EVLYLPSMWF HHVSQTPGDG GYTIAVNYWY
301: DMQFDIKYAY FNFLQSLLYK SSSLNPVLSW REDEDSESSD AEIAP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)