AT1G55870.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.934 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Polynucleotidyl transferase, ribonuclease H-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a poly(A)-specific ribonuclease, AtPARN. Expression of AtPARN is upregulated by ABA or stress treatment. Mutant is hypersensitivity to salicylic acid as well as ABA. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ABA-HYPERSENSITIVE GERMINATION 2 (AHG2); FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: response to abscisic acid stimulus, RNA modification, response to stress, response to salicylic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G25430.1); Has 452 Blast hits to 437 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 226; Fungi - 62; Plants - 74; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:20895663..20898359 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78014.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.13 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 689 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRRHKRWPLR SLVCSFSSSA AETVTTSTAA SATAAFPLKH VTRSNFETTL NDLRSLVKAA DFVAIDLEMT GVTSAPWRDS LEFDRYDVRY LKVKDSAEKF 101: AVVQFGVCPF RWDSRTQSFV SYPHNFFVFP RQELTFDPPA HEFLCQTTSM DFLAKYQFDF NTCIHEGISY LSRREEEEAS KRLKMLHGED GIDSSGETEE 201: LKLVRLADVL FAARMEKLLN EWRSGLLHGG NASSEFPRIS NGSNQSMETV FHHMRPALSL KGFTSHQLRV LNSVLRKHFG DLVYIHSNDK SSSSRDIVVY 301: TDSDSDKENL MKEAKDERKR LAERKIQSAI GFRQVIDLLA SEKKLIVGHN CFLDIAHVYS KFVGPLPSTA EKFVASINSH FPYIVDTKIL LNVNPMLHQR 401: MKKSSTSLSS AFSSLCPQIE FSSRSSDSFL QQRVNIDVEI DNVRCSNWNA GGKHEAGYDA FMTGCIFAQA CNHLGFDFKQ HSQLDDFAQN EKLEKYINRL 501: YLSWTRGDII DLRTGHSNAD NWRVSKFKYE NIVLIWNFPR KLKARGIKEC ICKAFGSASV TSVYHVDDSA VFVLFKNSEL VWDFLALKRQ LESSDGPVSV 601: LHPLSKILEG GNTGAADYEA YKEICSSHVS EVMFSDQAET VGVKSRTRPN AQCETETREE NTVTVTHKAS DLIDAFLANR VEVETATSN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)