AT2G02955.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.872 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : maternal effect embryo arrest 12 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
maternal effect embryo arrest 12 (MEE12); CONTAINS InterPro DOMAIN/s: Transcription initiation factor Rrn7 (InterPro:IPR021752); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01335.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:859592..861772 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75479.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.73 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||||||
| Length | 666 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MICTECENDA FDEEDDGYYY CQRCGVQVEN LIQTGVDDGD LIGEGGGTQG ALYNPKHRRT EPQPITPSQP RFTDDTSRYS QFKSQFESEN GNKELPREVK 101: RAPDSYVDKE PTEPVDFAAE TLSYENYYDE ARDRYVKAFL MMITYQCDAL VDKFNVTPLI IGLVGPISLR YVALSGVYHK DWANNAIRDS EHQSEDGEVK 201: DAKRLKRHKA EPRNIDGKRA VTIWFGILKK TMPLSSSLVI SFLACHQAGA PVLPTDIVRW AREGKLPYLS CFLDIREQMG ERSAACPVKV SIMARPFQVI 301: SAQMLEARAS VIADTIGLPL PPVNFYGIAS NYIKQLSIPE DKILDLARLI QNWSLPPELY LSTNEQKLPS RVCVMSILIV AIRMLYNING LGVWERSLGF 401: VNASDGDSET NSGTAEKATE FDTQELLKNL EAKYHEVAAE TLESEKDLVS YLSLGKNEFF AGLEEDSPDD TYRIVDNLWN GYPKDEDIEC LPKRGRDWDD 501: DVSLNQLSLY DSRFSDGNNP CSSSSRRNES VSIGLDLSSS EHRESSSPEK LKEIAIKRLI TDMGDDLFCY IPPRVKVKRL DYLQYVRKKE DGALIYAAHA 601: DYYILLRVCA KVAEIDVRNM HRGVLSFERR LAWIEKRIDQ VLHLTRPLMT CKHCCDDGNI GEDQDD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)