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AT2G02955.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.872
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : maternal effect embryo arrest 12
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
maternal effect embryo arrest 12 (MEE12); CONTAINS InterPro DOMAIN/s: Transcription initiation factor Rrn7 (InterPro:IPR021752); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01335.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0TBeggNOG:ENOG4111U12EMBL:AC004138EMBL:AY735572
EMBL:AY735573EMBL:AY735574EMBL:CP002685EnsemblPlants:AT2G02955
EnsemblPlants:AT2G02955.1entrez:814824GeneID:814824GO:GO:0001164
GO:GO:0001187GO:GO:0001189GO:GO:0005730GO:GO:0009793
GO:GO:0046872hmmpanther:PTHR31576hmmpanther:PTHR31576:SF2HOGENOM:HOG000083963
InParanoid:Q5XVF0InterPro:IPR021752KEGG:ath:AT2G02955ncoils:Coil
OMA:SMPPDLWPaxDb:Q5XVF0Pfam:PF11781Pfam:Q5XVF0
PhylomeDB:Q5XVF0PRIDE:Q5XVF0PRO:PR:Q5XVF0ProteinModelPortal:Q5XVF0
Proteomes:UP000006548RefSeq:NP_671769.1STRING:3702.AT2G02955.1TAIR:AT2G02955
tair10-symbols:MEE12UniGene:At.50973UniProt:Q5XVF0
Coordinates (TAIR10) chr2:+:859592..861772
Molecular Weight (calculated) 75479.20 Da
IEP (calculated) 4.73
GRAVY (calculated) -0.47
Length 666 amino acids
Sequence (TAIR10)
(BLAST)
001: MICTECENDA FDEEDDGYYY CQRCGVQVEN LIQTGVDDGD LIGEGGGTQG ALYNPKHRRT EPQPITPSQP RFTDDTSRYS QFKSQFESEN GNKELPREVK
101: RAPDSYVDKE PTEPVDFAAE TLSYENYYDE ARDRYVKAFL MMITYQCDAL VDKFNVTPLI IGLVGPISLR YVALSGVYHK DWANNAIRDS EHQSEDGEVK
201: DAKRLKRHKA EPRNIDGKRA VTIWFGILKK TMPLSSSLVI SFLACHQAGA PVLPTDIVRW AREGKLPYLS CFLDIREQMG ERSAACPVKV SIMARPFQVI
301: SAQMLEARAS VIADTIGLPL PPVNFYGIAS NYIKQLSIPE DKILDLARLI QNWSLPPELY LSTNEQKLPS RVCVMSILIV AIRMLYNING LGVWERSLGF
401: VNASDGDSET NSGTAEKATE FDTQELLKNL EAKYHEVAAE TLESEKDLVS YLSLGKNEFF AGLEEDSPDD TYRIVDNLWN GYPKDEDIEC LPKRGRDWDD
501: DVSLNQLSLY DSRFSDGNNP CSSSSRRNES VSIGLDLSSS EHRESSSPEK LKEIAIKRLI TDMGDDLFCY IPPRVKVKRL DYLQYVRKKE DGALIYAAHA
601: DYYILLRVCA KVAEIDVRNM HRGVLSFERR LAWIEKRIDQ VLHLTRPLMT CKHCCDDGNI GEDQDD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)