AT1G04050.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : homolog of SU(var)3-9 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes SUVR1, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins. Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity. SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain. Localized to the nucleolus, maybe involved in regulation of rRNA expression. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
homolog of SU(var)3-9 1 (SUVR1); FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), WIYLD domain (InterPro:IPR018848), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET domain (InterPro:IPR007728); BEST Arabidopsis thaliana protein match is: SET-domain containing protein lysine methyltransferase family protein (TAIR:AT5G43990.4); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:1045967..1049196 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82757.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.83 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 734 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAPNLRIKKA CDAMKLLGIS ETKTRAFLRK LLKTYENNWD FIEEDAYKVL LDAIFDEADA QSTEKNKKEE EKKKKEEEKK SRSVATSRGR RKAPEPLVQD 101: EEDDMDEDEF PLKRRLRSRR GRASSSSSSS SSYNNEDLKT QPEEEDEDDG VTELPPLKRY VRRNGERGLA MTVYNNASPS SSSRLSMEPE EVPPMVLLPA 201: HPMETKVSEA SALVILNDEP NIDHKPVISD TGNCSAPMLE MGKSNIHVQE WDWETKDILN DTTAMDVSPS SAIGESSEHK VAAASVELAS STSGEAKICL 301: SFAPATGETT NLHLPSMEDL RRAMEEKCLK SYKIVHPEFS VLGFMKDMCS CYIDLAKNST SQLLETETVC DMSKAGDESG AVGISMPLVV VPECEISGDG 401: WKAISNMKDI TAGEENVEIP WVNEINEKVP SRFRYMPHSF VFQDAPVIFS LSSFSDEQSC STSCIEDCLA SEMSCNCAIG VDNGFAYTLD GLLKEEFLEA 501: RISEARDQRK QVLRFCEECP LERAKKVEIL EPCKGHLKRG AIKECWFKCG CTKRCGNRVV QRGMHNKLQV FFTPNGKGWG LRTLEKLPKG AFICEYIGEI 601: LTIPELYQRS FEDKPTLPVI LDAHWGSEER LEGDKALCLD GMFYGNISRF LNHRCLDANL IEIPVQVETP DQHYYHLAFF TTRDIEAMEE LAWDYGIDFN 701: DNDSLMKPFD CLCGSRFCRN KKRSTKTMQI LNKA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)