AT1G26540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Agenet domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Agenet domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 6 (TAIR:AT2G47230.1); Has 924 Blast hits to 776 proteins in 124 species: Archae - 0; Bacteria - 33; Metazoa - 257; Fungi - 37; Plants - 429; Viruses - 3; Other Eukaryotes - 165 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:9167783..9170795 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79215.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.40 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.69 | ||||||||||||||||||||||||||||||||
| Length | 695 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MELQTMKITK DCVVEVSSEE EGFEGAWFRA VLEENPGNSS RRKLRVRYST LLDMDGSSPL IEHIEQRFIR PVPPEENQQK DVVLEEGLLV DADHKDGWWT 101: GVVVKKMEDD NYLVYFDLPP DIIQFERKQL RTHLIWTGGT WIQPEIEESN KSMFSPGTMV EVFSAKEAVW SPAMVVKETD VDDKKKFIVK DCNRYLSCNG 201: DEARPTNIVN SRRVRPIPPP SSVDKYALLE SVETFSGLGW HKGQVRKILS ENRYTVRLEA TQQESTIRHS DLRPFMVWED GVWYNDLKQK PIKETPPTIL 301: KRKPMRSCSA AKSMTPTSAT KHLRSFLNSK EISETPTKAK FVSATRELGK NKADAVMNDK THLLITPQET SIAPVITVTP LKQQDAETEG KKSPKKTPEP 401: VKHQNGLENS STQHEMPEEE NSNEKSRKRK REQNQNSNLN ETDETCNVSK AGVNGTSDTI RVDDVDDQPL SSWINIPTVL SSDQSSNVVD NSAADVEETQ 501: AKGALTIEPF TKNLPFWKTY EMEKGYKTVP QNPHFSPLLE FKEDIREWSA VGMMVSFYGL LEEVKKLQLD VSSSKLGSLS TCFAELEKHG FDIATPQSRI 601: NKVLSLQVGR AKKVEERKCL EKRIEAEEIE MQKFEHEMVE VERKMLELKR RAEVAKEKKE AADKMIVEMK SSAETIDQEI ANVELEFITS VLAPW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)