AT1G05950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; Has 50 Blast hits to 45 proteins in 14 species: Archae - 5; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:1804573..1807471 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70129.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.26 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||
| Length | 627 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEEVDCSLPV TKTTDSCPTE DAIRALLESL VDPLLPSKPT DDLPSTSIRE SVAKQVHAVV LLYNYYHRKD NPHLECLSFE SFRSLATVMK PALLQHLKED 101: GGVSGQTVLL EKVIVDACSL SMSLDASSDL FILNKCPIRR VAVLLVDSEK KSCYLQHSSI TQGVWSLLEK PIEKEKAARE NQKEEGVFQK VAFAVVKEAT 201: GVNHKDIVIL ERHLVCSLSE EKTAVRFYIM KCTSQDKFSG ENPVEEVLSC MQGPLFEKSF SDWTMNSIVE YFHVLPYATL IEDWFSRRGD TEFVIEKEPE 301: AVCDDIESNK VDATKESEVS DIFERREKAA LKRRYEIKAK KVAALLSHPG ARGKATTRLQ NRYLKGSMSG AKEPNVHSET VVALKAKNVG NEMSPCKDNY 401: SNGEKGGFEV ASDPKELKER GLQRKKAVPD RLNSIHKLNS TPASAHNSNP NLEELQTSLL SKATSLSETA LKVLLCKRDK LTRQQRNIED EIAKCDKCIQ 501: NIKGDWELQL ETVLECCNET YPRRNLQESL DKSACQSNKR LKLSETLPST KSLCQRLDDI CLMNNWVLPN YRVAPSDGGY EAEVRITGNH VACTIHGEEK 601: SDAEEARESA AACLLTKLQH DTAANLS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)