AT5G25580.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: DDT domain superfamily (TAIR:AT1G18950.1); Has 178 Blast hits to 178 proteins in 75 species: Archae - 0; Bacteria - 4; Metazoa - 51; Fungi - 33; Plants - 60; Viruses - 1; Other Eukaryotes - 29 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:8903550..8906108 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 45973.70 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.79 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.78 | ||||||||||||||||||||||||
| Length | 405 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVTLRQRTMV VTGEPEQKKE EERLCEDLTI LSSDSDNDSS SDSAVKHLRG RWELASVLNF FNVFGPLVSE KLKFTAEEIE MGLIESNTTN AQLHIALLKG 101: IPPVNKTLDD ANAWITVLCK KLAPWWPWIA KGEIHITVNK GEEISEYQGL DSINRLKILK ALCELRVQQD DARSYIQENT KEGDWDSSLR KRKLGGDGKK 201: TSYWFDGNDI QGYRLYREVN GISKKNAGSD LSCLSWETEA TNLDEFQSVA RELSSSKASS LAATGQMIET EAIPVVEKYH KKRERAIKKK MKEEMVVNVN 301: FSRPLRTTRS CRNHMPATYT FDEYDKMISD AVEETEDTDG DEVEGRDQQS ASLDSNDKST EVEAAEIHND DDKENEISKE DAEPKEEFGA KNRLRQRVTR 401: NSAIC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)