AT2G47230.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DOMAIN OF UNKNOWN FUNCTION 724 6 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DOMAIN OF UNKNOWN FUNCTION 724 6 (DUF6); FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: Agenet domain-containing protein (TAIR:AT1G26540.1); Has 654 Blast hits to 571 proteins in 116 species: Archae - 0; Bacteria - 26; Metazoa - 156; Fungi - 34; Plants - 356; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:19387126..19390011 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79611.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.41 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.67 | ||||||||||||||||||||||||||||||||
| Length | 701 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEETIRKGSE VEVSSTEEGF ADAWFRGILQ ENPTKSGRKK LRVRYLTLLN DDALSPLIEN IEPRFIRPVP PENEYNGIVL EEGTVVDADH KDGWWTGVII 101: KKLENGKFWV YYDSPPDIIE FERNQLRPHL RWSGWKWLRP DIQELDKSMF SSGTMAEVST IVDKAEVAWF PAMIIKEIEV DGEKKFIVKD CNKHLSFSGD 201: EARTNSTIDS SRVRPTPPPF PVEKYELMDR VEVFRGSVWR QGLVRGVLDH NCYMVCLVVT KEEPVVKHSD LRPCKVWEDG VWQDGPKQTP VIETPSNVMK 301: TKPMRSCSGA KSMTPKRTTK HARRSLNLEK SAETLTKAES RAATGELRSK RANDVINDNT PLVITPQVKP IASVEPVTPS RVRTATPLKQ TKADTQGKSS 401: PKKTLEPMRD ENGLENSTRQ KVLEEKNSEK KGRKRKRQEE HNSDLKETDE SCNGQMAEIN DTSSICNDVD DQPLAAWINL PTETSIDHSP IVVNNAAIAT 501: DVEERQANDT LMILPFAKKS PFWKMYETQE VCKIAPQSPH FSPLFEAKEE LREWTAVGMM VSFYGLLEEV KNLQLDVSPS TLGSLSCSFA ELEKHGFDVA 601: APQSRINKML SLQDERAKKA EERKGLEKKI EAGEIEGHTY EEEMAELELK ILELKRQQVV AKEMKEATDK VTSGMKSYAE MINQEIEDLR LEFQSTASAP 701: W |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)