AT5G07660.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : structural maintenance of chromosomes 6A | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes SMC6A (STRUCTURAL MAINTENANCE OF CHROMOSOMES 6A), a component of the SMC5/6 complex. SMC5/6 complex promotes sister chromatid alignment and homologous recombination after DNA damage. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
structural maintenance of chromosomes 6A (SMC6A); FUNCTIONS IN: two-component sensor activity, ATP binding; INVOLVED IN: sister chromatid cohesion, chromosome segregation, response to X-ray, double-strand break repair via homologous recombination; LOCATED IN: chromosome, nucleus, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G61460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:2422839..2429912 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 122201.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.53 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1058 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDEHGDHRQS NPFNDQQTSS GKILRIRLEN FMCHSNLEIE FGDWVNFITG QNGSGKSAIL TALCVAFGCR ARGTQRAATL KDFIKTGCSY ALVYVELKNQ 0101: GEDAFKPEIY GDTLIIERRI SDSTSLTVLK DHQGRKISSR KEELRELVEH YNIDVENPCV IMSQDKSREF LHSGNDKDKF KFFYKATLLQ QVDDILQSIG 0201: TKLNSANALL DEMEKTIKPI EKEINELLEK IKNMEHVEEI TQQVLHLKKK LAWSWVYDVD RQLKEQNEKI VKFKERVPTC QNKIDRKLGE VESLRVSLTE 0301: KKAQVACLID ESTAMKRELE CLRQSMKKAA REKIALEEEY HHKCSNIQKI KDRVRRLERQ IEDINEMTIR STQVEQSEIE GKLNQLTVEV EKAESLVSSL 0401: KEEENMVMEK ASAGGKEKEH IEEMIRDHEK KQRNMNAHIN DLKKHQTNKV TAFGGDKVIN LLRAIERHHR RFKMPPIGPI GAHVTLINGN RWASAVEQAL 0501: GNLLNAFIVT DHKDLVALRD CGKEAKYNNL KIIIYDFSRP RLDIPRHMIP QTEHPTILSV LHSENTTVLN VLVDVSCVER HVLAENYEVG KIIAFERRLS 0601: HLKDVFTIDG YRMFSRGPVQ TTLPPRPRRP TRLCASFDDQ IKDLEIEASR EQSEIQECRG QKREAEMNLE GLESTMRRLK KQRTQLEKDL TRKELEMQDL 0701: KNSVASETKA SPTSSVNELH LEIMKFQKEI EEKESLLEKL QDSLKEAELK ANELKASYEN LYESAKGEIE ALEKAEDELK EKEDELHSAE TEKNHYEDIM 0801: KDKVLPEIKQ AETIYKELEM KRQESNKKAS IICPESEIKA LGPWDGPTPL QLSAQINKIN HRLKRENENY SESIDDLRIM HGEKEQKIGK KRKTYKSCRE 0901: KLKVCKDAVD SRWNKLQRNK DLLKRELTWQ FNHHLGKKGI SGNIRVSYED KTLSIEVKMP QDATNSAVRD TRGLSGGERS FSTLCFTLAL QNMTEAPIRA 1001: MDEFDVFMDA VSRKISLDTL IDFALKQGSQ WMFITPHDIS MVKSHEKIKK QQMAAPRS |
||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)