AT1G03830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : guanylate-binding family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
guanylate-binding family protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: immune response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Guanylate-binding protein, N-terminal (InterPro:IPR015894), Guanylate-binding protein, C-terminal (InterPro:IPR003191); BEST Arabidopsis thaliana protein match is: Guanylate-binding family protein (TAIR:AT5G46070.1); Has 104208 Blast hits to 58378 proteins in 3029 species: Archae - 1549; Bacteria - 18958; Metazoa - 46662; Fungi - 8741; Plants - 6295; Viruses - 432; Other Eukaryotes - 21571 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:962128..966622 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 112507.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.38 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.64 | ||||||||||||||||||||||||||||||||||||
| Length | 991 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRNPTDESGR AVQLVYVDEN GKLKTDPEAI GALQKLKGPV AVVSLFGKAL QGKSFIWNQL LSRSIGFEVQ TLHRPCNGDI WMWIEPVKRI SEDGTEYSLV 101: LLDVELEDAK SIPTLGLNDI ALDLSRLLEI RKQDHVGEAK DNTFFELGQF SPMFVQLMMD INSETVEGGE DVTQNSKLKK LRPLLLYGVD ALMKFVSERV 201: RPKQRGDTIV TGPPLAGFTK AFSENVNNNI VPKISSLWQT VEELEGRRAR DTATEVYMSS LERSETPDES MLLEAHNKAV VEALTAFCES SIGNVEVKQK 301: YKRDLWSFFA KALEDHKRVA NVEAYSRCCN AIEDMGKKLW ALPCSQDANI GDMIKALDTA VAEYEASING PMKWQKLSSF LRESVQDILV HRRGNQMDEL 401: MSENSKLKLQ QQSLESTMNL LKKQLEGREK MNKEYQKRYE SAIDDICKLS DQFKNRINDL ESKCKSIHDE HSNLMEVLGS TRLEASEWKR KYEGTLDENG 501: VSNIRVGVDA SITRCSNKLI DWKIKYENTV SEQKAVTEKI AAMEEKLKQA STTEDGLRAE FSRVLDEKEK IITEKAAKLA TLEQQLASTR AELKKSALKV 601: DECSSEAKDV RLQMSLLNEK YESVKSASEL LETETETLKR EKDELDKKCH IHLEELEKLV LRLTNVESEA LEAKKLVDSL KLEAEAARDN ENKLQTSLVE 701: RCIEIDRAKS RIEELEKVCT LNSGEGEASA SKKLVDSMKM EAEASRKNEN KLQTLLEDKC IEIDRAKSRI EGLERDCLKL KYAESEAATV KELVSSMKME 801: VESARSNEKK LQLSLQEKTI EIDRAKGQIE ALERQKMELS ETLETRAKQN EEEVTKWQRI INAEKSKNIR ENLMEKEDSF MVWDEATPMQ RVKRLKVEAA 901: VTCSGSDFAQ ETEEDSVSQE SRKVRTMTPR RCTSSEAGAT SSSTGTGHSK YTMKKLRTEI LEHGFGAELV GLKNPRKRDL VQLYERTVLR K |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)