AT1G13790.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : XH/XS domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
XH/XS domain-containing protein; CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380), Domain of unknown function XH (InterPro:IPR005379), Domain of unknown function, putative Zinc finger, XS/XH (InterPro:IPR005381); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT3G48670.2); Has 49019 Blast hits to 30980 proteins in 1872 species: Archae - 565; Bacteria - 6337; Metazoa - 23607; Fungi - 3326; Plants - 1659; Viruses - 198; Other Eukaryotes - 13327 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:4727438..4730229 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 85872.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.90 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.11 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 736 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYSRRELEDL EYRYYSEMKD GTRKVKISES LFRCPFCYID RKRDYQFDDL LRHASGIGGS SRTKDGRDKA RHLALERYMR KYLRPRERPR PSPTSDVSSL 101: PKEEFTGKWK STLSTTEEGE FITTENSSSP HIVKAEPKFV SGDDSGRSGE ERLKFSDKPD PFFSNEDKSY PAKRPCLVSG AKEGDEPVQR IGLSHGASFA 201: PTYPQKLVSL GAGNGDQMYV HPWKGILANM KRTFNEKTRK YAGESGSKIR EDLIKKGFNP HKVTPLWNGR LGFTGFAIVD FGKEWEGFRN ATMFDKHFEV 301: SQCGKRDHDL TRDPGDKLYG WVAKQDDYYS RTAIGDHLRK QGDLKSVSGK EAEDQRKTFT LVSNLENTLV TKSDNLQQME SIYKQTSSVL EKRMKEKDEM 401: INTHNEKMSI MQQTARDYLA SIYEEHEKAS QHLEAQRKEY EDRENYLDKC QAKNKTERRK LQWQKHKNLM ATQEQNKADE DMMRLAEQQQ REKDELRKQV 501: RELEEKIDAE QALELEIERM RGDLQVMGHM QEGEGEDSKI KEMIEKTKEE LKEKEEDWEY QESLYQTLVV KHGYTNDELQ DARKALIRSM RELTTRAYIG 601: VKRMGALDET PFKKVAKEKY PAVEADKKAE ELCSLWEEHL GDSAWHPIKV VEKDGIAKEE LNEEDEKLQE LRKELGEEVY AAVTQALKER NEYNGSGRYI 701: VPELWNFKQN RKASIKEGVV YLVNSWKQKK PKPKRR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)