AT2G21710.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Mitochondrial transcription termination factor family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
embryo defective 2219 (EMB2219); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT4G02990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:9270886..9273307 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74749.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.69 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||||||||||||||
| Length | 641 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLLHCNVSYY TSTFSFISSS LRRQDNADDS QDTVIRRRHN ARSISLYIRH NRDLKLNKNP NESQETFVPP PPPPRRDLDG ENRSKLLELS LVTRRTPQFP 101: GSIYAQSASD ADIASSLPSL RNFLGSDGDD DGESEREMIV KALEIRRKVT KEIIKESLVR KGRFGITYAT NVTDRLGDFV DHVMIQAAAL KRLPEFSESR 201: FNLRARTVIE DSNFVPLVRW LKHHELSYNR IAKIICMSKG NLDSIRIMIE WLKSIHVKGE FIAVAFLRSG DNILQRNREE LNEIVEYLES NGVRRDWMGY 301: VVGRCPELLS FSMEEVKSRV DFFLKMGMNQ NDFGTMVYDY PKIIGFFSFQ VMEKKINYLK EFGLSTEEVG RLLAYKPHLM GCSIEERWKP LVKYFYYLGI 401: PKEGMKRILV VKPILYCIDL EKTIAPKVRF LQEMGIPNEA IGNMLVKFPS LLTNSLYKKI RPVVIFLLTR AGVTQKDIGK VIAMDPALLG CSIGTKLEPN 501: MRYYISLGIR FYQLGEMIAD FPMLLRYNVD NLRPKYRYLR RTMIRPLQDL IEFPRFFSYS LERRIIPRHT IMVENRVNFK LRYMLACTDE EFERRVRDKV 601: ERRERFEAGL DSEDSQPSDE NISDQEIAFS DEAEEEEDLT E |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)